Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01575 ATGGCGACCTCAAAACCCCAAAGGTCACCTGAGGAGGTCGAAGATATCATCCTTCGTAAAGTCTTCTTAATTTCTCTCACCGATACCTCCGATTCTGATTCCAGAATCGTCTATCTCGAGCAAACCGCCGCCGAACTTCTTAGCGAAGGCAAACCATTGAGGATTTCAAGAGATGTAATGGAGCGCATCATAATCGATCGTCTTTCTGCCCATGTCCCCTCCGCCGAACCCCCTTTTCAGTACCTAATTGGGTGCTACCGTCGAGCTCACGACGAGACTAAGAAAATCGCTTCCATGAAGGATAAGACTTTGCGCTCTGATATGGAAATTGCTCTTAAGCAAGCCAAGAAGTTGACGATTTCGTATTGTAGGATTCATTTAGGGAATCCTGAATTGTTTTCTTCCGGTGCTGATTTAGGTACTAACTCCAACACTTCGCCTTTGCTTCCTTTGATTTTCTCTGAGGTCGGTGGGAGTTCCATGGATGGATTTGGGGCTAGTACTAGTGTTGGTGGAGCCTATCAGTGCCCTCCGGGTTTCCTGGAGGAGTTTCTCCGTGACTCGGATTTTGATACATTAGAACCCATTTTGAAGGGGTTGTATGAGGATTTAAGGGGTAGTGTCCTTAAAGTTTCTGCTCTTGGGAACTTCCAGCAGCCCTTAAGAGCACTCAGGTTTCTGGTCAGCTTTCCTGTCGGTGCTAAATCTCTTGTGAATCACCCTTGGTGGATTCCTACGGGTAAATATTCCAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTCTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTTAAGAGCCAACCTGATGTTGGCCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCAGCTGATTTACTATCTTCATTCACTACAATTAAAACAGTCATGAATAACTTATATGATGGCCTTTCGGAAGTTCTTCTCTCCCTTCTTAAGAACACAGAGACCCGTGAAAATGTTATTGAGTATCTGGCAGAGGTGATAAATAGAAACTCATCAAGGGCTCATATACAGGTTGATCCTCTCTCCTGTGCAAGTTCGGGCATGTTTGTTAATCTCAGTGCCATCATGCTACGTCTTTGTGAGCCTTTTCTAGATGCAAACTTGACCAAAAGGGATAAAATTGATCCAAAATATGTATGTTATAGTAACCGATTGGAGTTGAGAGGATTAACTGCTCTACATGCTTCATCTGAAGAAGTTACCGAGTGGATTAATAATGGTACTCAGTTGAGAACTGATAACCCTGGACAGTCCAGCGACAGTGAAAGTCGCTTGCTGCAATCCCAGGAGGCTTCCAGTTCTGGCAGTAATGCTACTATTGGATCTTCTACTGCAAAAGCAAGATCGAGTAGTGATAAAACTAGGTACCCGTTTATATGTGAGTGCTTCTTTATGACTGCAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAGCATTTAGTACAGGATATATCTAGGTGTGAAGATACATTGTCCACGCTTAAAGTTATGCAGGGACAAGGCCCTGCCCCACACCTTGAAATGGATATAGGTCGCCTTGAGAAGGAAATAGAGTTGTACTCACAGGAAAAACTTTGTTATGAAGCTCAAATACTGAGGGATGGGACACTGATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCATCTGGTTAGTTGGTTTGGTTGGTGGATTTAAAATGCCTCTTCCATCAGCTTGCCCAATGGAATTTGCATCCATGCCAGAACATTTTGTGGAAGATGCTATGGAATTGCTTATATTTGCTTCTCGGATTCCAAAAGCTTTGGATGGCATCAATTTGGATGATTTTATGAACTTCATTATTATGTTCATGGCAAGTCCCGAATATATTAGAAATCCTTACTTAAGAGCAAAGATGGTTGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGGTTCATCCGTAACGGCAACACTATTTGAAGGCCACCAACTATCGCTTGAGTATCTTGTTAGGAATCTTTTAAAACTCTATGTAGACATCGAGTTTACTGGATCACATACACAGTTTTATGACAAGTTTAACATCCGTCATAATATTGCTGAACTTCTGGAATACCTTTGGCTGGTTCCTAGTCATCGAAATGCTTGGAGAATGATTGCCAAGGAAGAGGAGAAGGGCGTTTACTTGAATTTCTTGAACTTCCTAATCAACGATAGCATATATCTTCTTGACGAAAGCCTTAATAAGATTCTCGAACTTAAAGAGCTTGAAGCTGAAATGTCAAATACTGCAGAATGGGAACAGCGACCTGCTCAAGAGAGGCAGGAAAGAACTCGGCTCTTTCACTCCCAAGAAAATATCATCCGAATCGATATGAAATTAGCAAATGAGGACGTGAGTATGCTGGCATTTACTTCAGAGCAAATCACAGCTCCTTTCCTACTTCCAGAGATGGTTGAAAGGGTGGCCAGCATGCTTAATTATTTTCTCTTGCAACTTGTTGGTCCTCAGCGAAAATCTCTTAGTCTGAAAGACCCTGAAAAGTATGAATTCCGTCCAAAAGATTTGCTTAAGCAGATTGTTCAAATATATGTTCATCTGGCAAGAGGAGATACGGAGAATATTTTCCCAGCTGCCATTTCAAAGGACGGCCGATCATACAACGAGCAGTTGTTCACTGCTGCAGCAGCTGTACTTAGACGTATTGGAGAAGATAGTAGGATAATACAGGAGTTTACTGATCTTGGTAACAAAGCCAAAGATGCAGCTTCTGAGGCAATGGATGCTGAAGCTACTCTAGGAGATATACCCGACGAGTTCCTCGACCCAATCCAATACACTTTAATGAAGGACCCTGTGATCTTACCTTCTTCGAGGATCACCGTCGACAGACCCGTCATTCAAAGACATCTCCTCAGCGACAGCACCGACCCATTCAACCGGTCTCATCTGACCGCGGACATGCTAATACCGAATGAAGAACTGAAAGCAAGAATCAAAGAATTTATTAGGTCACAAGAACTGAAGAAGCAACTAGATGGAGGGGTTGCAATGCAGAGCAGCAAGGCAACCATCCAACCCACAAGTGGAGAAATGTTGATTGATTAA 3129 42.98 MATSKPQRSPEEVEDIILRKVFLISLTDTSDSDSRIVYLEQTAAELLSEGKPLRISRDVMERIIIDRLSAHVPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSDMEIALKQAKKLTISYCRIHLGNPELFSSGADLGTNSNTSPLLPLIFSEVGGSSMDGFGASTSVGGAYQCPPGFLEEFLRDSDFDTLEPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNNLYDGLSEVLLSLLKNTETRENVIEYLAEVINRNSSRAHIQVDPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYSNRLELRGLTALHASSEEVTEWINNGTQLRTDNPGQSSDSESRLLQSQEASSSGSNATIGSSTAKARSSSDKTRYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKVMQGQGPAPHLEMDIGRLEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVIWLVGLVGGFKMPLPSACPMEFASMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSGSSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWLVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWEQRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKDLLKQIVQIYVHLARGDTENIFPAAISKDGRSYNEQLFTAAAAVLRRIGEDSRIIQEFTDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPNEELKARIKEFIRSQELKKQLDGGVAMQSSKATIQPTSGEMLID* 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22294985 22303790 - Chy4G082930.1 Chy04g01575 225474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01575 1042 Coils Coil 521 548 - -
Chy04g01575 1042 Pfam Ubiquitin elongating factor core 261 926 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Chy04g01575 1042 MobiDBLite consensus disorder prediction 422 460 - -
Chy04g01575 1042 CDD RING-Ubox_UBE4A 945 1013 - -
Chy04g01575 1042 ProSiteProfiles U-box domain profile. 942 1016 IPR003613 GO:0004842|GO:0016567
Chy04g01575 1042 SUPERFAMILY RING/U-box 935 1013 - -
Chy04g01575 1042 Pfam U-box domain 943 1013 IPR003613 GO:0004842|GO:0016567
Chy04g01575 1042 PANTHER UBIQUITINATION FACTOR E4 1 1020 IPR045132 GO:0000151|GO:0030433|GO:0034450
Chy04g01575 1042 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 942 1020 IPR013083 -
Chy04g01575 1042 SMART Ubox_2 946 1009 IPR003613 GO:0004842|GO:0016567
Chy04g01575 1042 PANTHER - 1 1020 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01575 K10597 UBE4B, UFD2; ubiquitin conjugation factor E4 B [EC:2.3.2.27] - csv:101211398 2013.81
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007211 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01575 Chy_Chr04 FPKM 23.834864 26.3218 45.632584 45.133427 13.689467 13.065386 15.133251 29.797827 25.584755 28.262703