Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01583 ATGGAAGTTCTAAGAACAAGGGTCGGTGGCAGTGGGCTTCTGGTGGCCGTTGCGGCAGTGGTGGTACTGCTGGCGGCGGTGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAACATGGGTTGGAATACTAATGTGAACTATACTACCTGGGCTCAGGGAAAGCACTTCTATTATGATGATTGGCTCTTTTTTGTGTATGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAGACAGACTATGAGAATTGCATTTCTGATCATCCACTCCACAATTTCACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCTTATTACTTCATAAGTGGAAAAGGCTTTTGCTTTGGAGGCATGAAGCTTGCTATCCATGTCGAACACCTACCTCCCCCGCCCTCGTCCTCGCCCTTGAACGAAAAGAGCAGTGCTCTTAGATCTACCTACACTAGCCACACCCCATTCGTTTTAACCGCTGTTTTCGCCATTGCTGCTGTACTTGAAGCTTTTGCTCGGGTCTGGTAG 540 49.26 MEVLRTRVGGSGLLVAVAAVVVLLAAVPEVSATRWTVGGNMGWNTNVNYTTWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCFGGMKLAIHVEHLPPPPSSSPLNEKSSALRSTYTSHTPFVLTAVFAIAAVLEAFARVW* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22340579 22341967 + Chy4G083010.1 Chy04g01583 225482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01583 179 Pfam Plastocyanin-like domain 43 124 IPR003245 GO:0009055
Chy04g01583 179 PANTHER LAMIN-LIKE PROTEIN 13 171 - -
Chy04g01583 179 Gene3D - 31 134 IPR008972 -
Chy04g01583 179 PANTHER BLUE COPPER PROTEIN 13 171 IPR039391 GO:0009055
Chy04g01583 179 SUPERFAMILY Cupredoxins 32 131 IPR008972 -
Chy04g01583 179 ProSiteProfiles Phytocyanin domain profile. 33 133 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01583 - - - csv:101210415 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01583 Chy-Chr4:22340579 Chy09g01153 Chy-Chr9:13780922 1.89E-22 dispersed
Chy04g01583 Chy-Chr4:22340579 Chy04g01584 Chy-Chr4:22345020 4.04E-28 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01583 . 13 180 Phytocyanin Superfamily AT5G15350 53.3 6.3e-49 190.7
Chy03g01081 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 5.0e-41 164.5
Chy03g01081 . 16 171 Phytocyanin Superfamily AT4G31840 51.3 5.0e-41 164.5
Chy04g01583 . 13 180 Phytocyanin Superfamily AT5G15350 53.3 6.3e-49 190.7
Chy05g00185 . 11 219 Phytocyanin Superfamily AT1G08500 56.1 5.6e-61 231.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01583 Chy_Chr04 FPKM 0.0 0.0 4.039487 4.400887 2.861268 1.687608 2.619345 0.0 0.0 0.0