Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01609 ATGGCTTCTTCGTCTTCTGATCCTGGCTTCAAACACGAACCTGGTGCCTGTAGCACTGCTGCTGCTGGAAGAGGGACGGCGGAATCTTCCGAGGTTGTTATGGCGAATGATCAGCTTTTACTCTATAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCCAAAGAACGCATTAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCTATATACCGCGGAGTCACTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACTTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGTGTATCTGGGAGCATATGATGAAGAAGAGGCTGCTGCTAGAGCATACGATTTGGCTGCCTTAAAATACTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGAAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGATCCTTCATTTGGTCGTATGCCGGGCCCTGATTATGTTAGCAGTATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTTGTCCACAACTTCTGCATTGAAAGGAAGATTGACCTAACAAGTCATATTAAGTGGTGGGGGCCAAACAAAACTCGAACGGCCAGTGCAGGCTCAAAGTCATCAGAAGAAGACAAAAATAGTTGTGTTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCACCCGTCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACTTCTGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCACGGTCAGCAGCCTACAAAAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAACTAACAACGAGAATGATGAGAACGAAAATAAAAACACTGTTAACAAGATAGATCATGGGAAAGTGGTTGAAACACCTACCACAAGTCATGGTGGTGATCCCAGCGAGAGATATGGGGTTACTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACCGTTGAACCTTTGGGAGATCCTATTCATTGGACATCTCTCGTTTCTGTTCTTCCTACCGGACTTTCTCGCACAGCTGAGGTTACGAAAACTGAAACCTCTTCAACTTACACTTTGTTTCGGCCTGAGGAATAA 1296 44.44 MASSSSDPGFKHEPGACSTAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFGRMPGPDYVSSINYGAGDDQATESEFVHNFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCVGEVGSELKALGQTTRPTEPYEMPCLGTSGVKKAASKVSALSILSRSAAYKSLQEKALKLQETNNENDENENKNTVNKIDHGKVVETPTTSHGGDPSERYGVTFGTSGGLPLQRNMFPLTPFLTAPLLSSYNTVEPLGDPIHWTSLVSVLPTGLSRTAEVTKTETSSTYTLFRPEE* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22549547 22554225 - Chy4G083270.1 Chy04g01609 225508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01609 431 Gene3D AP2/ERF domain 74 142 IPR036955 GO:0003700|GO:0006355
Chy04g01609 431 SUPERFAMILY DNA-binding domain 73 141 IPR016177 GO:0003677
Chy04g01609 431 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Chy04g01609 431 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Chy04g01609 431 Pfam AP2 domain 74 132 IPR001471 GO:0003700|GO:0006355
Chy04g01609 431 SMART rav1_2 74 146 IPR001471 GO:0003700|GO:0006355
Chy04g01609 431 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 429 - -
Chy04g01609 431 PANTHER BNAA03G19580D PROTEIN 20 429 - -
Chy04g01609 431 MobiDBLite consensus disorder prediction 1 23 - -
Chy04g01609 431 ProSiteProfiles AP2/ERF domain profile. 74 140 IPR001471 GO:0003700|GO:0006355
Chy04g01609 431 Coils Coil 305 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01609 Chy-Chr4:22549547 Chy10g01211 Chy-Chr10:16828954 1.45E-60 dispersed
Chy04g01609 Chy-Chr4:22549547 Chy03g00967 Chy-Chr3:13208870 7.16E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17889 PF00847 AP2 3.50E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01609 K09285 - csv:101206434 835.484