Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01614 ATGGCCGACGCCGACCAACTCCCTCGCCGGAAACCCCTTGGGAATAAGCGTGCCAATAGAGACCCCGACTCCGCCACCGTCACTGCTCCTTGTGGCGCATGCAAGTTTCTCAGGAGAAAATGTGTCAATGGTTGTATCTTTGCGCCACATTTCGCCTCGGATCAGGGTGCTGCACGTTTCGCTGCTGTGCATAAGATCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTGCATATTCCGGTCAGCCGTCGAAACGATGCTGTCGTTACTATTTCTTATGAGGCTCAGGCCAGACTGTCCGACCCTGTCTATGGCTGTGTCTCGACTGTTCTCGCCCTACAACAACAGGTAGCATCTCTTCAGGCGGAGCTTGCGGCCGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTGCAGTTCAAAACTCACAGCCATCCCAAGTAGGAGTTATGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCCGCTCCTAATGCAATCAACTTGAGTAGTTTTGCTTCCAATTACGACCTTCCTACCGAGACTGCCCCGTCTTCCCATCACTTAGAGCCTCTTCACTTCCCCCACCGCCCAATTGATGAGGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCTATCTTTGCTGATTAA 675 52.59 MADADQLPRRKPLGNKRANRDPDSATVTAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKIFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAAAVQNSQPSQVGVMQPAYSNNSSISVSASTSAPNAINLSSFASNYDLPTETAPSSHHLEPLHFPHRPIDEEEDEENSQLPAIFAD* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22594907 22597578 - Chy4G083320.1 Chy04g01614 225513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01614 224 PANTHER LOB DOMAIN CONTAINING PROTEIN 21 202 - -
Chy04g01614 224 Coils Coil 110 130 - -
Chy04g01614 224 MobiDBLite consensus disorder prediction 1 26 - -
Chy04g01614 224 ProSiteProfiles LOB domain profile. 29 131 IPR004883 -
Chy04g01614 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 21 202 - -
Chy04g01614 224 Pfam Lateral organ boundaries (LOB) domain 30 128 IPR004883 -
Chy04g01614 224 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01053 Chy-Chr4:15596263 Chy04g01614 Chy-Chr4:22594907 8.87E-43 dispersed
Chy04g01614 Chy-Chr4:22594907 Chy11g01987 Chy-Chr11:25787609 9.50E-50 dispersed
Chy04g01614 Chy-Chr4:22594907 Chy06g00237 Chy-Chr6:1572197 1.45E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17891 PF03195 LOB 2.40E-37 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01614 - - csv:101215818 397.897