Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01664 ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATTTAAACAAAGCGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACGGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGATCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTCAACCCTGAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCAAACACTGCCATTACAGAAGGAGTCAAATCCAAATTTGGTTTCTACATCTGGTGGTCCTCGTGAAAACTGGGGAGAGTCCAATATGGCAGACACCAGCACAAGGACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGTATATGATTCTAGCAACAAATCGAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGTGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGAGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCTCATTCAATGAGTGGGAATGGGGCCCTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTTAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCCGAGATCCTAAAGCTTCTTGTAAGCCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATCTGCAACCTACAACAATTATCACAACAAGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAGACATTGGCCAGTGCCACCCCTGCAACGTCAGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCTTACGCCAGGCGGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTAGCAATAAATGACTACTTCTCCCGCCTTAGAGCCCTCAGTTCTCTGTGGCTAGCACGGCCACGAGATTGA 1404 44.94 MGSRTVKIGADDLNKAVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSTLNNIQFGSLIKPLASTDVNLPTAVMGSQTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAVYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD* 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23054917 23062619 + Chy4G083820.1 Chy04g01664 225563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01664 467 MobiDBLite consensus disorder prediction 109 143 - -
Chy04g01664 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Chy04g01664 467 Coils Coil 201 228 - -
Chy04g01664 467 Gene3D - 181 233 - -
Chy04g01664 467 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 70 467 - -
Chy04g01664 467 ProSiteProfiles DOG1 domain profile. 247 464 IPR025422 GO:0006351|GO:0043565
Chy04g01664 467 PANTHER TRANSCRIPTION FACTOR TGA9 70 467 - -
Chy04g01664 467 MobiDBLite consensus disorder prediction 109 183 - -
Chy04g01664 467 Pfam bZIP transcription factor 181 222 IPR004827 GO:0003700|GO:0006355
Chy04g01664 467 SMART brlzneu 178 241 IPR004827 GO:0003700|GO:0006355
Chy04g01664 467 MobiDBLite consensus disorder prediction 144 159 - -
Chy04g01664 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Chy04g01664 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Chy04g01664 467 Pfam Seed dormancy control 265 340 IPR025422 GO:0006351|GO:0043565
Chy04g01664 467 CDD bZIP_HBP1b-like 182 233 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00328 Chy-Chr3:4065959 Chy04g01664 Chy-Chr4:23054917 1.25E-163 dispersed
Chy04g01664 Chy-Chr4:23054917 Chy10g01378 Chy-Chr10:17993986 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17894 PF14144 DOG1 5.90E-30 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01664 K14431 - csv:101219149 860.907