Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01673 ATGGGAAGTGGCGGGTACAACGTTCAACTCCAAGACTTGAGAATCGACGAAATTAGCGATATGGGTTTGGAAATTATGGATCCAAACACCTGCATCAGGGGCTGCTGCTCCAGCAATTCGATTCCTCTTCACCTTCAACCTTCCGCTTTCACGCTGCTCTCTCCAATTGCCCGAGGGGCCGAGAGTACTGTGTATGAAGGAAGGTTGGATGGTAGAAAAGTTGCTGTAAAGAAGCCTATATTGTCTACTTCTGAGGAATTGGATAAATTTCATAAGGAGCTCCAGTTGCTATGTGAATTAGATCATCCAGGCATAGTAAAATTGGTTGCAGCAAATGCGAAGCCACCTAACTACATGTTTTTCTTTGAATACTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGCTGAAGAATGGAATCCAAATATCAATCAGGTGCTTATGATCACCCTAGAGTTAGCAAAGGCTTTGCAGTATTTGCATAACTTGGGGATTGTACATAGGGATGTGAAACCAGCAAACGTTCTTCTTGACAAAGATTTGCATCCATACTTGGCTGATTTTGGTTTAGCAATACACCAGAAGTATCTGAAAGAAGTTTCTGCTGAAAATTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGACGTATATAGTTTTGGCATCCTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGTACTGAAGCACAGGCCCACACTGTACTGGAAATGAATTATACAGAGCAGCTGCTTACGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCCCTTCCTAGTGATGAGTCAGGCACACCATCTAGGTTGTTATCACTTATACAGTGGTGCTGGGATGGAAATCCTAAGAACAGACCATCTTTTTCTGATATAGTTATGGACTTGGAGTCAATTTGGGAGAATAGAAAAAGTTTAGAATCTGTTTCCTCTGGACAACTTGATTTGTGTGGTAGGCTTAATGATGCTAATGAACATGATTGTGCGTATCGAGAAGAAATTAACTGGTCAAATCAGGGAGAACATTGTTCTCAAATGTTTTCTGATGCAGATAGGTGTGGTTTGAATGAATGGCTTGACTACTCAACAGACCAATTGGCATACCGCCCAACACTTTCTTGTGGATCATTCTCCACCTGTGGGATGAGAGAGACCATGGAGGACTCTCATTTCCTTTTGCCTCACTTCTGCAGTGATGAGAACATCCATGCCTTTGGGATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCAAAGAGCATTTTCCACGAGAAGTCCTGCAGATGCATTGATGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAACTCGAGTTCTTTTGCAAATCCAAGAAACTTAAACACAAAAACTGGCATCCTGGTTGCACTGCTGTTGTTGCTCTAATTGTTAGAGACAAGCTTTTTGCTGCCAATGCTGGTGATTGCAGGGCAATATTGTGTCGAGCTGGGGATCCCATTGTTTTGAGTAAGGATCATGTCGGTAGTTGTCTTGAGGAGAGAGAGCGTGTCATCAATGCTGGAGGGCAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTAACTCGATCAATTGGTGACTATGATCTGAAGCCAGCTGTGACTGCAGAACCTGAGATAACAGAAACTGTTTTGACATCACAGGATGATTGCCTGGTTATGGCTAGTGATGGATTGTGGGATGTCCTTAGCAACTCTGAGGTAGTTGATATAATAAGGGATACCGTCAAAGATCCAGGAATGTGCTCAAAGCGACTCGCAACAGAAGCGGCAGCTCGGGGCAGCCGCGATAACATCACGGTAAATTATTTGGGAAAAGAAATCAAACTTCATCATGATGAACATTGCAATCAAGATAAAGATTCCTCCAAAGTTCCTGAATCCGAGCAGCCCGAACAACCCGAGACCGAAACCAAAACAAAGGATGAAACCCGAGTTTTCTACTGCAAATTCTGCAGTAGAAAGTTCTCCAATCTACAAGCATTAGGAGGCCATCAAAACGCCCATAAACGAGAAAGAGATATTGCCAAAAGAGAGAAGGCAGCCGCCGCAGCAGCCGCCGCCGGTGGAAGAACTACGGACGCCTTTGATTCAATTGGCTCTTTTTACCATCCGTACTATTCAGCAATGGCGATTCACTGTCTGCGAAACAAATCCCCCGGGATTCCGATTCGGCCCCAATCGGTGATTCGTAAACCGAGTCGGTCCCGAGTCGAATTGGGCGGCGGCGCCACCGCTGCTGCCTATGGATACCGGTGGTGGCCGAGAGAACAGTACATGGCGGCGGCGGTGGCGGCGCAACAGCAACAAATACAAAGTGGGGGATCATTACAAGGCGTTAACAACGGAATTGAATCCATAGCCATGGCGAATAGAAACGCTTCTTCTTCTTCTTCTTCTTCGCAGATTTTTGGTGCTGATCAATACATTGTCAATGGCCTTGATTTATCTCTCAAACTTTGA 2640 44.7 MGSGGYNVQLQDLRIDEISDMGLEIMDPNTCIRGCCSSNSIPLHLQPSAFTLLSPIARGAESTVYEGRLDGRKVAVKKPILSTSEELDKFHKELQLLCELDHPGIVKLVAANAKPPNYMFFFEYYESPNLAEKLHAEEWNPNINQVLMITLELAKALQYLHNLGIVHRDVKPANVLLDKDLHPYLADFGLAIHQKYLKEVSAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPSDESGTPSRLLSLIQWCWDGNPKNRPSFSDIVMDLESIWENRKSLESVSSGQLDLCGRLNDANEHDCAYREEINWSNQGEHCSQMFSDADRCGLNEWLDYSTDQLAYRPTLSCGSFSTCGMRETMEDSHFLLPHFCSDENIHAFGIFDGHRGAAAAEFSAQAIPGFLQRAFSTRSPADALMEAFVKTDIEFRKELEFFCKSKKLKHKNWHPGCTAVVALIVRDKLFAANAGDCRAILCRAGDPIVLSKDHVGSCLEERERVINAGGQVKWQVDTWRVGPAALQVTRSIGDYDLKPAVTAEPEITETVLTSQDDCLVMASDGLWDVLSNSEVVDIIRDTVKDPGMCSKRLATEAAARGSRDNITVNYLGKEIKLHHDEHCNQDKDSSKVPESEQPEQPETETKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAAAAAAGGRTTDAFDSIGSFYHPYYSAMAIHCLRNKSPGIPIRPQSVIRKPSRSRVELGGGATAAAYGYRWWPREQYMAAAVAAQQQQIQSGGSLQGVNNGIESIAMANRNASSSSSSSQIFGADQYIVNGLDLSLKL* 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23112345 23122692 - Chy4G083910.1 Chy04g01673 225572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01673 879 SMART PP2C_4 398 663 IPR001932 -
Chy04g01673 879 ProSiteProfiles Zinc finger C2H2 type domain profile. 706 733 IPR013087 -
Chy04g01673 879 SMART PP2C_SIG_2 423 665 IPR001932 -
Chy04g01673 879 ProSiteProfiles Protein kinase domain profile. 50 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01673 879 Pfam Protein kinase domain 52 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01673 879 SUPERFAMILY Protein kinase-like (PK-like) 44 343 IPR011009 -
Chy04g01673 879 SUPERFAMILY beta-beta-alpha zinc fingers 703 733 IPR036236 -
Chy04g01673 879 ProSitePatterns Zinc finger C2H2 type domain signature. 708 728 IPR013087 -
Chy04g01673 879 CDD PP2Cc 408 660 IPR001932 -
Chy04g01673 879 PANTHER - 21 660 - -
Chy04g01673 879 Gene3D Classic Zinc Finger 668 753 - -
Chy04g01673 879 MobiDBLite consensus disorder prediction 673 700 - -
Chy04g01673 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Chy04g01673 879 ProSiteProfiles PPM-type phosphatase domain profile. 408 665 IPR001932 -
Chy04g01673 879 SMART serkin_6 50 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01673 879 PANTHER PROTEIN PHOSPHATASE 2C 21 660 IPR015655 GO:0004722|GO:0006470
Chy04g01673 879 Gene3D Transferase(Phosphotransferase) domain 1 37 354 - -
Chy04g01673 879 SUPERFAMILY PP2C-like 402 660 IPR036457 -
Chy04g01673 879 Pfam Protein phosphatase 2C 410 658 IPR001932 -
Chy04g01673 879 Gene3D - 399 665 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01119 Chy-Chr2:7914533 Chy04g01673 Chy-Chr4:23112345 2.45E-08 dispersed
Chy04g01673 Chy-Chr4:23112345 Chy07g00305 Chy-Chr7:2510023 8.38E-47 dispersed
Chy07g00273 Chy-Chr7:2136522 Chy04g01673 Chy-Chr4:23112345 1.49E-22 dispersed
Chy10g00700 Chy-Chr10:13368260 Chy04g01673 Chy-Chr4:23112345 2.43E-15 dispersed
Chy04g01673 Chy-Chr4:23112345 Chy12g01272 Chy-Chr12:17302183 2.66E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71216 PF00069 Pkinase 2.70E-47 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01673 - - csv:101217487 1251.11