Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g01674 | ATGGACATGGGTAGATCGTTGCTGGAAGTTGCGATGGCAATTGACCAGGCCGAGCTTAGCACTGAGCAGGTTCTTAGAAGGGACATTCCATGGGAGACATACATGACTACTAAACTTATCAGTGGAACAAGCCTTCAGTTGTTAAGGCGTTATGATAACAGACCAGAGAGTTACAGGGCGCAGCTATTGGATGATGATGGTCCAGCATATGTTCGGGTATTTGTTAGCATTTTACGCGATATATTTAAGGAAGAAACGGTGGAATATGTTCTAGCATTAATCGATGAAATGCTTACAGCGAACCCAAAAAGAGCAAGATTGTTCCATGATCCTTCTCTTGCAAGTGAAGATGCTTATGAACCTTTCCTAAGATTGCTTTGGAAAGGAAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCGCTGATAGTGAGTGCTAGACCGAAAACTCATGATGGGAGTTTTGCAAATGATGATTCCTCGAACTCCAAGAACAAAAATACTACCATTGATGATGTTTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCGATCAATTGCCTTGCAACTCTGCTGAAGGAACCAAAGGTCAGATCCTCCTTCGTTCAGACAGATGGAGTGAAATTGCTTATTCCTTTGATTTCTCCTGCATCGACCCAACAATCTATTCAGCTTCTATACGAAACTTGTCTGTGTGTTTGGCTCTTGTCATATTATGAGCCGGCAATTGAATTCTTGGCTACCTCTAGGTCCCTTCCAAGACTCATCGACGTTGTCAAGAGTTCTACAAAAGAGAAGGTTGTCCGAGTTATTATTTTGACCTTGAGGAACCTACTCCACAAGGGGACATTTGGAGCTCAAATGGTGGGTCTTGGACTACCACAAGTTGTTCAAAGTTTGAAATCACAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAATCAACTAGAAGAGGGGCTGAAAGATAACATCAAGAAACTAAGTTCTTTCGACAAGTACAAGCAAGAAGTCCTCCTCGGGCATCTTGACTGGTCTCCTATGCACAAAGATGTCAATTTCTGGCGAGAAAACATTACAAGCTTTGAAGAGAACGACTTGAAGATATTGAGGGTCCTAATCACAATTCTGGATAGTTCCAGTGATCCAAGGGCTTTGGCAGTTGCTTGTTTTGATCTTTCTCAGTTCATTCAACACCATCCAGCTGGGAGAATTATAGTGACAGATCTCAAGGCCAAAGAAAGAGTGATGAAACTGATGAATCATGAGAATGCTGAGGTTACCAAATATGCCCTCCTTTGCATTCAAAGGCTCTTTCTTGGTGCCAAGTATGCTAGCTTTCTACAGGCTTAA | 1398 | 42.49 | MDMGRSLLEVAMAIDQAELSTEQVLRRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDPSLASEDAYEPFLRLLWKGNWFIQEKSCKILALIVSARPKTHDGSFANDDSSNSKNKNTTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQTDGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEFLATSRSLPRLIDVVKSSTKEKVVRVIILTLRNLLHKGTFGAQMVGLGLPQVVQSLKSQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDVNFWRENITSFEENDLKILRVLITILDSSSDPRALAVACFDLSQFIQHHPAGRIIVTDLKAKERVMKLMNHENAEVTKYALLCIQRLFLGAKYASFLQA* | 466 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23123095 | 23130826 | + | Chy4G083920.1 | Chy04g01674 | 225573 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g01674 | 465 | Pfam | V-ATPase subunit H | 18 | 336 | IPR004908 | GO:0000221|GO:0046961|GO:1902600 | |
| Chy04g01674 | 465 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT H | 14 | 465 | IPR004908 | GO:0000221|GO:0046961|GO:1902600 | |
| Chy04g01674 | 465 | SUPERFAMILY | ARM repeat | 21 | 455 | IPR016024 | - | |
| Chy04g01674 | 465 | Pfam | V-ATPase subunit H | 342 | 454 | IPR011987 | GO:0000221|GO:1902600 | |
| Chy04g01674 | 465 | ProSitePatterns | Cytochrome b5 family, heme-binding domain signature. | 411 | 418 | IPR018506 | GO:0020037 | |
| Chy04g01674 | 465 | Gene3D | - | 356 | 457 | IPR038497 | - | |
| Chy04g01674 | 465 | PIRSF | V-ATP_synth_H | 6 | 464 | IPR004908 | GO:0000221|GO:0046961|GO:1902600 | |
| Chy04g01674 | 465 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT H | 14 | 465 | - | - | |
| Chy04g01674 | 465 | SMART | arm_5 | 415 | 455 | IPR000225 | GO:0005515 | |
| Chy04g01674 | 465 | SMART | arm_5 | 254 | 295 | IPR000225 | GO:0005515 | |
| Chy04g01674 | 465 | SMART | arm_5 | 209 | 253 | IPR000225 | GO:0005515 | |
| Chy04g01674 | 465 | CDD | VATPase_H | 15 | 459 | - | - | |
| Chy04g01674 | 465 | Gene3D | - | 14 | 344 | IPR011989 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g01674 | K02144 | ATPeV1H; V-type H+-transporting ATPase subunit H | - | csv:101217015 | 889.412 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Chy03g01604 | . | 376 | 1373 | Primary Pumps ATPases(2) | AT1G10130 | 82.8 | 0.0e+00 | 1621.7 | |
| Chy11g01306 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1340.1 | |
| Chy03g01413 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 8.0e-296 | 1013.1 | |
| Chy01g00757 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 3.4e-294 | 1007.7 | |
| Chy01g00757 | . | 6 | 819 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1226.1 | |
| Chy03g01413 | . | 1 | 809 | Primary Pumps ATPases(2) | AT2G21410 | 73.4 | 0.0e+00 | 1197.6 | |
| Chy11g01306 | . | 9 | 820 | Primary Pumps ATPases(2) | AT2G21410 | 62.2 | 3.0e-298 | 1021.1 | |
| Chy01g00757 | . | 8 | 819 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1231.5 | |
| Chy03g01413 | . | 1 | 809 | Primary Pumps ATPases(2) | AT4G39080 | 74.3 | 0.0e+00 | 1192.9 | |
| Chy11g01306 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 5.6e-297 | 1016.9 | |
| Chy06g00369 | . | 28 | 129 | Primary Pumps ATPases(2) | AT4G34720 | 93.1 | 1.1e-38 | 156.4 | |
| Chy03g01403 | . | 36 | 130 | Primary Pumps ATPases(2) | AT4G34720 | 98.9 | 1.9e-38 | 155.6 | |
| Chy03g01404 | . | 28 | 121 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 9.2e-38 | 153.3 | |
| Chy06g00369 | . | 2 | 123 | Primary Pumps ATPases(2) | AT1G75630 | 95.9 | 1.3e-50 | 196.4 | |
| Chy03g01404 | . | 2 | 124 | Primary Pumps ATPases(2) | AT1G75630 | 95.1 | 5.1e-50 | 194.5 | |
| Chy03g01403 | . | 2 | 130 | Primary Pumps ATPases(2) | AT1G75630 | 90.7 | 4.7e-48 | 188.0 | |
| Chy06g00369 | . | 3 | 129 | Primary Pumps ATPases(2) | AT2G16510 | 93.7 | 1.3e-51 | 199.5 | |
| Chy03g01404 | . | 3 | 121 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 8.4e-51 | 196.8 | |
| Chy03g01403 | . | 3 | 130 | Primary Pumps ATPases(2) | AT2G16510 | 92.2 | 3.5e-49 | 191.4 | |
| Chy06g00369 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.1e-52 | 202.6 | |
| Chy03g01404 | . | 1 | 121 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 1.6e-51 | 198.7 | |
| Chy03g01403 | . | 1 | 130 | Primary Pumps ATPases(2) | AT1G19910 | 92.3 | 1.8e-50 | 195.3 | |
| Chy04g00346 | . | 1 | 175 | Primary Pumps ATPases(2) | AT2G25610 | 84.0 | 2.6e-71 | 265.4 | |
| Chy03g01156 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 2.9e-70 | 261.9 | |
| Chy06g00369 | . | 28 | 129 | Primary Pumps ATPases(2) | AT4G38920 | 93.1 | 3.1e-38 | 154.8 | |
| Chy03g01403 | . | 36 | 130 | Primary Pumps ATPases(2) | AT4G38920 | 98.9 | 5.2e-38 | 154.1 | |
| Chy03g01404 | . | 28 | 121 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 2.6e-37 | 151.8 | |
| Chy04g00346 | . | 6 | 175 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 2.0e-73 | 272.3 | |
| Chy03g01156 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 2.4e-71 | 265.4 | |
| Chy12g00153 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 80.4 | 0.0e+00 | 1667.5 | |
| Chy12g00153 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1669.1 | |
| Chy03g01604 | . | 376 | 1373 | Primary Pumps ATPases(2) | AT1G10130 | 82.8 | 0.0e+00 | 1621.7 | |
| Chy12g00153 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.4 | 0.0e+00 | 1313.9 | |
| Chy02g01423 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.2e-57 | 219.2 | |
| Chy01g00662 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 1.5e-268 | 921.8 | |
| Chy05g00536 | . | 553 | 814 | Primary Pumps ATPases(2) | AT3G58730 | 82.1 | 1.6e-117 | 419.1 | |
| Chy04g01674 | . | 14 | 466 | Primary Pumps ATPases(2) | AT3G42050 | 79.5 | 5.8e-208 | 720.3 | |
| Chy06g00369 | . | 3 | 129 | Primary Pumps ATPases(2) | AT2G16510 | 93.7 | 1.3e-51 | 199.5 | |
| Chy03g01404 | . | 3 | 121 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 8.4e-51 | 196.8 | |
| Chy03g01403 | . | 3 | 130 | Primary Pumps ATPases(2) | AT2G16510 | 92.2 | 3.5e-49 | 191.4 | |
| Chy01g00662 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 2.3e-269 | 924.5 | |
| Chy06g01559 | . | 177 | 360 | Primary Pumps ATPases(2) | AT1G64200 | 73.3 | 1.8e-65 | 245.7 | |
| Chy01g00662 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 3.0e-266 | 914.1 | |
| Chy11g01306 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1340.1 | |
| Chy03g01413 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 8.0e-296 | 1013.1 | |
| Chy01g00757 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 3.4e-294 | 1007.7 | |
| Chy04g01523 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 91.7 | 8.6e-191 | 662.9 | |
| Chy06g01559 | . | 177 | 406 | Primary Pumps ATPases(2) | AT4G11150 | 76.6 | 1.3e-89 | 326.2 | |
| Chy01g02105 | . | 1 | 624 | Primary Pumps ATPases(2) | AT1G78900 | 92.8 | 0.0e+00 | 1167.1 | |
| Chy01g00662 | . | 6 | 489 | Primary Pumps ATPases(2) | AT1G76030 | 96.3 | 1.5e-268 | 921.8 | |
| Chy01g00662 | . | 1 | 489 | Primary Pumps ATPases(2) | AT4G38510 | 95.5 | 2.3e-269 | 924.5 | |
| Chy01g00662 | . | 9 | 489 | Primary Pumps ATPases(2) | AT1G20260 | 96.1 | 3.0e-266 | 914.1 | |
| Chy05g00536 | . | 553 | 814 | Primary Pumps ATPases(2) | AT3G58730 | 82.1 | 1.6e-117 | 419.1 | |
| Chy06g01559 | . | 177 | 406 | Primary Pumps ATPases(2) | AT4G11150 | 76.6 | 1.3e-89 | 326.2 | |
| Chy06g01559 | . | 177 | 399 | Primary Pumps ATPases(2) | AT3G08560 | 68.1 | 7.7e-74 | 273.9 | |
| Chy06g01559 | . | 177 | 360 | Primary Pumps ATPases(2) | AT1G64200 | 73.3 | 1.8e-65 | 245.7 | |
| Chy02g01423 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.9 | 1.2e-57 | 219.2 | |
| Chy04g01674 | . | 14 | 466 | Primary Pumps ATPases(2) | AT3G42050 | 79.5 | 5.8e-208 | 720.3 | |
| Chy11g01306 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.3 | 0.0e+00 | 1340.1 | |
| Chy03g01413 | . | 1 | 803 | Primary Pumps ATPases(2) | AT2G28520 | 63.2 | 8.0e-296 | 1013.1 | |
| Chy01g00757 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 63.3 | 3.4e-294 | 1007.7 | |
| Chy01g00757 | . | 6 | 819 | Primary Pumps ATPases(2) | AT2G21410 | 75.6 | 0.0e+00 | 1226.1 | |
| Chy03g01413 | . | 1 | 809 | Primary Pumps ATPases(2) | AT2G21410 | 73.4 | 0.0e+00 | 1197.6 | |
| Chy11g01306 | . | 9 | 820 | Primary Pumps ATPases(2) | AT2G21410 | 62.2 | 3.0e-298 | 1021.1 | |
| Chy01g00757 | . | 8 | 819 | Primary Pumps ATPases(2) | AT4G39080 | 76.9 | 0.0e+00 | 1231.5 | |
| Chy03g01413 | . | 1 | 809 | Primary Pumps ATPases(2) | AT4G39080 | 74.3 | 0.0e+00 | 1192.9 | |
| Chy11g01306 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.5 | 5.6e-297 | 1016.9 | |
| Chy06g00369 | . | 28 | 129 | Primary Pumps ATPases(2) | AT4G34720 | 93.1 | 1.1e-38 | 156.4 | |
| Chy03g01403 | . | 36 | 130 | Primary Pumps ATPases(2) | AT4G34720 | 98.9 | 1.9e-38 | 155.6 | |
| Chy03g01404 | . | 28 | 121 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 9.2e-38 | 153.3 | |
| Chy06g00369 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.1e-52 | 202.6 | |
| Chy03g01404 | . | 1 | 121 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 1.6e-51 | 198.7 | |
| Chy03g01403 | . | 1 | 130 | Primary Pumps ATPases(2) | AT1G19910 | 92.3 | 1.8e-50 | 195.3 | |
| Chy06g00369 | . | 28 | 129 | Primary Pumps ATPases(2) | AT4G38920 | 93.1 | 3.1e-38 | 154.8 | |
| Chy03g01403 | . | 36 | 130 | Primary Pumps ATPases(2) | AT4G38920 | 98.9 | 5.2e-38 | 154.1 | |
| Chy03g01404 | . | 28 | 121 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 2.6e-37 | 151.8 | |
| Chy06g00369 | . | 2 | 123 | Primary Pumps ATPases(2) | AT1G75630 | 95.9 | 1.3e-50 | 196.4 | |
| Chy03g01404 | . | 2 | 124 | Primary Pumps ATPases(2) | AT1G75630 | 95.1 | 5.1e-50 | 194.5 | |
| Chy03g01403 | . | 2 | 130 | Primary Pumps ATPases(2) | AT1G75630 | 90.7 | 4.7e-48 | 188.0 | |
| Chy06g00369 | . | 3 | 129 | Primary Pumps ATPases(2) | AT2G16510 | 93.7 | 1.3e-51 | 199.5 | |
| Chy03g01404 | . | 3 | 121 | Primary Pumps ATPases(2) | AT2G16510 | 99.2 | 8.4e-51 | 196.8 | |
| Chy03g01403 | . | 3 | 130 | Primary Pumps ATPases(2) | AT2G16510 | 92.2 | 3.5e-49 | 191.4 | |
| Chy04g00346 | . | 6 | 175 | Primary Pumps ATPases(2) | AT4G32530 | 77.5 | 2.0e-73 | 272.3 | |
| Chy03g01156 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 2.4e-71 | 265.4 | |
| Chy04g00346 | . | 1 | 175 | Primary Pumps ATPases(2) | AT2G25610 | 84.0 | 2.6e-71 | 265.4 | |
| Chy03g01156 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 2.9e-70 | 261.9 | |
| Chy04g01523 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28710 | 94.0 | 7.4e-198 | 686.4 | |
| Chy04g01523 | . | 1 | 351 | Primary Pumps ATPases(2) | AT3G28715 | 91.7 | 8.6e-191 | 662.9 | |
| Chy12g00153 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 80.4 | 0.0e+00 | 1667.5 | |
| Chy12g00153 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.4 | 0.0e+00 | 1313.9 | |
| Chy03g01604 | . | 376 | 1373 | Primary Pumps ATPases(2) | AT1G10130 | 82.8 | 0.0e+00 | 1621.7 | |
| Chy12g00153 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.3 | 0.0e+00 | 1669.1 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003959 | 2 | 3 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 3 | 3 | 1 | 43 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chy04g01674 | Chy_Chr04 | FPKM | 16.604008 | 16.822813 | 10.886038 | 9.896605 | 16.825052 | 15.404485 | 16.406029 | 9.638129 | 9.509973 | 9.85906 |