Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01678 ATGGGATTCTTAGAATGCATTGGCCGTTTCTTTCAAAATGCAAACCCATACATCGCAGTCATCTCCCTCCAATTCGGCTATGCTGGAATGAACATCATCTCTGTCGTCTCCCTCAACCGTGGTATGAGCCACTATGTCCTTGTCGTCTACCGTCATGCCTTTGCCACCGCCGTCATGGCACCCTTTGCTCTTATTCTTGAGAGGAAAGTAAGACCGAAGATTACATTTAAGATTTTCATTCAGATGTTTGCTCTTGCTCTTCTTGGACCACTGATTGATCAAAACTTCTACTACGTGGGGTTGAAAATGACATCCCCAACTTTCTCTTGTGCAATAAGCAACATGCTCCCTTCAATGACATTCGTCATGGCAGTCATTTGCAGGATGGAGAAGTTGGATTTGAAACGAGTGAGATATCAAGCGAAGTTGTTTGGAACGATAGTGACGGTGGTGGGAGCCATGTTGATGACATTTTACAAAGGAAGTGTCATCAACTTCTTCTCGACTGGGCACGGCCACCAACCGTCTACAGCCGACGCAGCTGCGGTTAACCACCACAACGACGGAGAGTTCGTCAAAGGCTCCATATTGCTCATCATCGCCACTCTGGCTTGGGCAGCCTTCTTCATTCTCCAAGTAATAACCTTGAGAAAATACACAGCCCATCTTTCTCTCACCACCTTGGTTTGCTTTTTGGGAACCCTTCAAGCCATTGTCGTTACCCTCGCCTTGGAACACCGCCCTGGCGCCTGGGCCATCGGCTGGGACATGAACCTTCTTGCCGCTGCATATGCGGGGATTGTGACATCAGGGGTGGCATATTATGTTCAAGGTTTGGTTATGAAGACAAAAGGGCCAGTTTTTGTTACAGCTTTTAGTCCATTGATGATGGTTATTGTTGCTTTCATGGGATCTTTCATCTTGGCTGAAAAGATTTATGTTGGAGGGATAATTGGAGCAGTGTTGATTGTAATAGGATTATACTCTGTTTTGTGGGGAAAATACAAGGAAAGCAAAGAGAAGGAAAGTAATGGAGATATTGTTGAAGCAATGAAAAGTGGAGATGAATTGCCTATAACAAATGAAGGCATTGAAGAAGCAATTGATCATCAAAAGATAGAGGGTTTGGCCATTACTATTCCACCCATCGAAGCACTTAACATGGAGAAGAGGCAGCTTCAAGACACTCGCTAA 1194 44.97 MGFLECIGRFFQNANPYIAVISLQFGYAGMNIISVVSLNRGMSHYVLVVYRHAFATAVMAPFALILERKVRPKITFKIFIQMFALALLGPLIDQNFYYVGLKMTSPTFSCAISNMLPSMTFVMAVICRMEKLDLKRVRYQAKLFGTIVTVVGAMLMTFYKGSVINFFSTGHGHQPSTADAAAVNHHNDGEFVKGSILLIIATLAWAAFFILQVITLRKYTAHLSLTTLVCFLGTLQAIVVTLALEHRPGAWAIGWDMNLLAAAYAGIVTSGVAYYVQGLVMKTKGPVFVTAFSPLMMVIVAFMGSFILAEKIYVGGIIGAVLIVIGLYSVLWGKYKESKEKESNGDIVEAMKSGDELPITNEGIEEAIDHQKIEGLAITIPPIEALNMEKRQLQDTR* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23148707 23151034 - Chy4G083960.1 Chy04g01678 225577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01678 397 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Chy04g01678 397 Pfam EamA-like transporter family 19 157 IPR000620 GO:0016020|GO:0016021
Chy04g01678 397 PANTHER WAT1-RELATED PROTEIN 11 367 IPR030184 GO:0016021|GO:0022857
Chy04g01678 397 PANTHER WAT1-RELATED PROTEIN 11 367 - -
Chy04g01678 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
Chy04g01678 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01417 Chy-Chr3:16911876 Chy04g01678 Chy-Chr4:23148707 7.08E-81 dispersed
Chy04g00454 Chy-Chr4:4141187 Chy04g01678 Chy-Chr4:23148707 7.82E-81 dispersed
Chy04g01678 Chy-Chr4:23148707 Chy08g00232 Chy-Chr8:5223604 2.59E-157 dispersed
Chy09g00320 Chy-Chr9:2737732 Chy04g01678 Chy-Chr4:23148707 4.38E-56 dispersed
Chy11g00066 Chy-Chr11:684881 Chy04g01678 Chy-Chr4:23148707 2.71E-77 dispersed
Chy12g00604 Chy-Chr12:8577060 Chy04g01678 Chy-Chr4:23148707 2.82E-83 dispersed
Chy04g01676 Chy-Chr4:23141239 Chy04g01678 Chy-Chr4:23148707 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01678 - - csv:101211966 752.281