Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g01682 | ATGAAAGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAAGAACTTCCTTCTCCTGATGAATTAATGCCTCTTTCTCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGACATCACTAACGCAAATCCTCCTAACGATTCTCATCCTCCGCCGCCTCCGCCGCCTCCTCCGGTTCTCATTCAGCCCACTTCTGCAGATTTTGCTGATTCAGGGGATTTGGGTTCTGGTGCCGGCGACGAACCTGCAAGAACTCTTAAACGCCCACGCCTTGTGTGGACTCCACAGCTTCATAAGCGATTCGTCGACGCTGTTGCTCATTTGGGGATCAAAAATGCCGTCCCCAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTGACTCGTGAGAACGTAGCTAGTCATTTGCAGAAATACCGGCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAACGGCGGTGCTGGATTGGTTTCACCCGCTTCAGATCCCGCCACCGACCATTTGTTTGCAAGCTCCCCTGTTCCACCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCGTCGGAGCTCTGCAGCATCACCACCACCAGATGGCGGCAGCTGCCGCTGCCGCTCAGTACCATCGACAAGTAGCTCATTTTGGGTCGTCGCCGCCGACGAATGGGCAATTTGAGAACACGTTTTTGGCTCGCTCTGTTCATCGGGTTGGAGCTCCAGTGAGTACTCCGGTGACGAATTACAGCGAGGATTTAGATTCGGGGAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACTGGAAATGATTAA | 861 | 51.1 | MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNANPPNDSHPPPPPPPPPVLIQPTSADFADSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGANGGAGLVSPASDPATDHLFASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNGQFENTFLARSVHRVGAPVSTPVTNYSEDLDSGNGTGGRKVLTLFPTGND* | 287 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23196235 | 23197095 | + | Chy4G084000.1 | Chy04g01682 | 225581 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g01682 | 286 | SUPERFAMILY | Homeodomain-like | 86 | 146 | IPR009057 | - | |
| Chy04g01682 | 286 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 94 | 145 | IPR017930 | - | |
| Chy04g01682 | 286 | MobiDBLite | consensus disorder prediction | 46 | 63 | - | - | |
| Chy04g01682 | 286 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 90 | 142 | IPR006447 | GO:0003677 | |
| Chy04g01682 | 286 | Pfam | Myb-like DNA-binding domain | 93 | 141 | IPR001005 | - | |
| Chy04g01682 | 286 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 286 | - | - | |
| Chy04g01682 | 286 | Gene3D | - | 86 | 148 | - | - | |
| Chy04g01682 | 286 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 286 | IPR044841 | GO:0003700|GO:0006355 | |
| Chy04g01682 | 286 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Chy04g01682 | 286 | MobiDBLite | consensus disorder prediction | 36 | 88 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy04g01682 | Chy-Chr4:23196235 | Chy08g00237 | Chy-Chr8:5370739 | 2.23E-121 | dispersed | |
| Chy04g01682 | Chy-Chr4:23196235 | Chy12g00223 | Chy-Chr12:2599006 | 5.10E-45 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17895 | PF00249 | Myb_DNA-binding | 2.10E-08 | CL0123 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g01682 | - | - | csv:101216059 | 489.96 |