Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01682 ATGAAAGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAAGAACTTCCTTCTCCTGATGAATTAATGCCTCTTTCTCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGACATCACTAACGCAAATCCTCCTAACGATTCTCATCCTCCGCCGCCTCCGCCGCCTCCTCCGGTTCTCATTCAGCCCACTTCTGCAGATTTTGCTGATTCAGGGGATTTGGGTTCTGGTGCCGGCGACGAACCTGCAAGAACTCTTAAACGCCCACGCCTTGTGTGGACTCCACAGCTTCATAAGCGATTCGTCGACGCTGTTGCTCATTTGGGGATCAAAAATGCCGTCCCCAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTGACTCGTGAGAACGTAGCTAGTCATTTGCAGAAATACCGGCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAACGGCGGTGCTGGATTGGTTTCACCCGCTTCAGATCCCGCCACCGACCATTTGTTTGCAAGCTCCCCTGTTCCACCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCGTCGGAGCTCTGCAGCATCACCACCACCAGATGGCGGCAGCTGCCGCTGCCGCTCAGTACCATCGACAAGTAGCTCATTTTGGGTCGTCGCCGCCGACGAATGGGCAATTTGAGAACACGTTTTTGGCTCGCTCTGTTCATCGGGTTGGAGCTCCAGTGAGTACTCCGGTGACGAATTACAGCGAGGATTTAGATTCGGGGAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACTGGAAATGATTAA 861 51.1 MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNANPPNDSHPPPPPPPPPVLIQPTSADFADSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGANGGAGLVSPASDPATDHLFASSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNGQFENTFLARSVHRVGAPVSTPVTNYSEDLDSGNGTGGRKVLTLFPTGND* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23196235 23197095 + Chy4G084000.1 Chy04g01682 225581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01682 286 SUPERFAMILY Homeodomain-like 86 146 IPR009057 -
Chy04g01682 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 145 IPR017930 -
Chy04g01682 286 MobiDBLite consensus disorder prediction 46 63 - -
Chy04g01682 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 142 IPR006447 GO:0003677
Chy04g01682 286 Pfam Myb-like DNA-binding domain 93 141 IPR001005 -
Chy04g01682 286 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 286 - -
Chy04g01682 286 Gene3D - 86 148 - -
Chy04g01682 286 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 286 IPR044841 GO:0003700|GO:0006355
Chy04g01682 286 MobiDBLite consensus disorder prediction 1 23 - -
Chy04g01682 286 MobiDBLite consensus disorder prediction 36 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01682 - - - csv:101216059 489.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01682 Chy-Chr4:23196235 Chy08g00237 Chy-Chr8:5370739 2.23E-121 dispersed
Chy04g01682 Chy-Chr4:23196235 Chy12g00223 Chy-Chr12:2599006 5.10E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT3G24120 59.2 1.5e-82 303.1
Chy11g01047 . 22 167 G2-like Transcription Factor Family AT3G24120 64.2 5.2e-43 171.8
Chy01g00844 . 7 157 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Chy04g00796 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Chy02g00490 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Chy06g01030 . 10 282 G2-like Transcription Factor Family AT5G16560 51.8 7.3e-48 188.3
Chy04g00122 . 191 396 G2-like Transcription Factor Family AT5G16560 51.7 9.5e-40 161.4
Chy04g00565 CCT 1 160 G2-like Transcription Factor Family AT5G42630 60.0 2.5e-37 152.5
Chy10g01118 . 19 258 G2-like Transcription Factor Family AT1G25550 52.7 2.0e-49 193.0
Chy08g00237 . 1 302 G2-like Transcription Factor Family AT5G05090 56.5 3.0e-74 275.4
Chy04g01682 . 1 287 G2-like Transcription Factor Family AT5G05090 55.4 1.1e-71 266.9
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT4G13640 57.2 5.7e-66 248.1
Chy06g00365 . 12 316 G2-like Transcription Factor Family AT3G24120 59.2 1.5e-82 303.1
Chy11g01047 . 22 167 G2-like Transcription Factor Family AT3G24120 64.2 5.2e-43 171.8
Chy01g00844 . 7 157 G2-like Transcription Factor Family AT3G24120 58.9 1.2e-39 160.6
Chy04g00796 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Chy02g00490 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Chy04g01368 . 33 265 G2-like Transcription Factor Family AT1G69580 50.4 6.1e-40 161.8
Chy01g00844 . 5 373 G2-like Transcription Factor Family AT1G79430 53.9 3.6e-83 305.4
Chy11g01047 . 1 365 G2-like Transcription Factor Family AT1G79430 51.4 1.3e-75 280.4
Chy06g00365 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 6.9e-42 168.3
Chy04g01368 . 72 266 G2-like Transcription Factor Family AT5G18240 52.5 4.9e-39 158.7
Chy02g00491 . 54 262 G2-like Transcription Factor Family AT2G01060 64.3 1.4e-51 199.9
Chy08g00237 . 1 302 G2-like Transcription Factor Family AT3G10760 62.5 1.3e-90 330.1
Chy04g01682 . 1 287 G2-like Transcription Factor Family AT3G10760 58.5 9.9e-83 303.9
Chy08g00237 . 1 203 G2-like Transcription Factor Family AT2G40970 60.7 6.0e-61 231.1
Chy04g01682 . 1 199 G2-like Transcription Factor Family AT2G40970 59.5 8.2e-58 220.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17895 PF00249 Myb_DNA-binding 2.10E-08 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01682 Chy_Chr04 FPKM 3.142395 2.61188 3.869307 2.502404 6.042965 4.492253 6.080366 2.472174 3.044156 3.230055