Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01739 ATGAATAACTTAACTGTTGAAACGGAAGATGTATTTTCCAGCTTGCTCGAGCTTGCTGCTAATGATGACATTGATGCCTTCAAGAGATCGATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGATTATGGTATGGTCGCCTACGTGGTTCGAAGCAAATGACTAATGAGCAGAGAACGCCTTTAATGGTTGCTGCTACTTATGGTAGCTCTGAGGTTTTGAAGCTTATTCTTTCTCTCTCTTGTGCTGATGTAAATCGCGCTGTCGGACTTGATAGAAGCACTGCCCTTCACTGTGCAGCCTCAGGTGGGGCTGGAAATGCTGTAGATATCGTGAAGCGGCTCTTAGCCGCAGGTGCTGATCCTAATATGGTTGATGAGAATGGACATCGACCTGTTGATGTGATTGTTGCCCCCTTAAGGCATGGCGAGCTTAAATCAACCCTTACAGAACTTCTTAAGACGAATGGTTTTTCTGGTGAAGGAAATCTTGATGTTGTAACAGGAGGTAGAGATTTGCATTCTTCTCGCCCTTCGTCTCCTCTGAATGTCCCCTCTTCATCGGAGTTAGTTTCTTCTCCAACAAAATCAAAACTAAGTGATTTTCCAATGTATTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCTACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCTTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCTTTTGTCCATCCCGGAGAAAATGCTAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCGTGTCCTGATTTTCGGAAGGGCGCTTGCAGACGGGGAGATATGTGTGAATATGCTCATGGGGTGTTTGAGTGTTGGTTGCACCCAGCACAATATCGAACCCGACTTTGCAAAGATGGCACAAATTGCTCGAGAAGAGTCTGCTTTTTTGCACACACAACTGACGAATTGCGCCCTCTGTATGTATCGACTGGCTCTGCTGTTCCCTCACCTCGTTCTTGTACTTCTGGGGCTTCTGCCATGGATTATACTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCATTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCTGTGCCTTGGCCCCAACCGAACGTGCCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATGCCTGTAGAGGACTTCGATTATCTGAGTGATTTTGATATGCAACAACAACAGCTCCTTAACGACTTGAATTGTCTTTCTCAACCACCTTTGAGTTCAAATTCATTGAACCGTTCTGGTCGTATGAAAACTATGACCCCCTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAATCTCTGGCTTCTGCTGTGTTTTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAGCAACAGAATATGTTATCACCGATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTTGGTGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCGGTGGGATCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAACAGTTTCGCAGCCTCAGTTCGCGTGAACTCGGTTCCAATTCTCCCTCTATTGTTGGTTCCCCTGCAAATTCTTGGTCAAAATGGGGACCTTCTAATGGAAGACCTGATTGGGCAGTAAATGCGGATGAAATGGGTAAACTTCGGCGATCGTCATCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGAGATAAAAGAAAAACAGGCTCATCCCAATTTGGGTGTCGATAGTTTTGTATCCTCTGGTGAGAGTTCTAACATGAACTCACAAATGGAGTCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTCGATCATCTCGTCGCACAACAGCAGTGA 2106 45.25 MNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSSEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAGNAVDIVKRLLAAGADPNMVDENGHRPVDVIVAPLRHGELKSTLTELLKTNGFSGEGNLDVVTGGRDLHSSRPSSPLNVPSSSELVSSPTKSKLSDFPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTDELRPLYVSTGSAVPSPRSCTSGASAMDYTTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVPWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRMKTMTPSNLDDLFSAESSSPRYSDQSLASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGSNSPSIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGVDSFVSSGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQQ* 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23772606 23774711 + Chy4G084570.1 Chy04g01739 225638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01739 701 MobiDBLite consensus disorder prediction 575 601 - -
Chy04g01739 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Chy04g01739 701 SUPERFAMILY Ankyrin repeat 6 137 IPR036770 -
Chy04g01739 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Chy04g01739 701 MobiDBLite consensus disorder prediction 167 198 - -
Chy04g01739 701 MobiDBLite consensus disorder prediction 173 198 - -
Chy04g01739 701 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 698 - -
Chy04g01739 701 Gene3D - 9 151 IPR036770 -
Chy04g01739 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Chy04g01739 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Chy04g01739 701 MobiDBLite consensus disorder prediction 575 602 - -
Chy04g01739 701 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Chy04g01739 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 127 - -
Chy04g01739 701 Gene3D - 271 334 - -
Chy04g01739 701 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Chy04g01739 701 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Chy04g01739 701 Pfam Ankyrin repeats (3 copies) 55 126 IPR002110 GO:0005515
Chy04g01739 701 PANTHER UNKEMPT FAMILY MEMBER 1 698 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01739 Chy-Chr4:23772606 Chy10g00408 Chy-Chr10:9756104 8.32E-155 dispersed
Chy04g01739 Chy-Chr4:23772606 Chy11g01356 Chy-Chr11:19834103 3.91E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17902 PF12796 Ank_2 3.80E-09 CL0465 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01739 - - csv:101207646 1356.66