Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01755 ATGGAGATCAAAGTAGGGACTGTAGGTGGATCCAGTCCAATCGGGCGTCAATCGGATGATACTGGGCTTGAATCGCTGCAATTCTGTGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCTTTCACTGCACTTTTGGAACTCCCGGCGACGCAGGCTTTAGAGCTACTTCACTCGCCGGATTCCGCGACGGCGGCAGTTGTGAACGATGACTCCGTTCATCACTGTATCAAAGACGTTCCGAAACCCTACTTTAGTGCCTTCAATTGCAATTTGACCTTTCCGACGAACTCGGGTCTAATTGAACGTGTTACCAAGCTTTCGGTTTTGGCTAAAGAGCATTCGCCGGAGACGACAAGCTCAGTGCCGTTGAATTCGAGTGTGAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGACACCGATTCAAACCCGAATCCCTTGCAGACTTTAATCTCCGATCCGACGGTGGAGAACACGAACCAGAGGTCGGCGAAGAGGAAGGAACGCGAAAAAAAGGGAAGAGGGTCAACAAAGAAGAGCAAGAATGAAAGCAACGAGGATGCTGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACTGACAGCCATAGCCTAGCAGAGCGAGCAAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGATCTCAGGCACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGAAAGCATATTGGCTACAGAAAATGAACCCGTACTTGAAAGCAACTTTCCAACGATGGTTTCGCCATTGATGTGGCCAGAAATCCCCGTAAATGGAACAAGACAACAATATCAACCCCAATGGCATTTTGACGGCTCAGTTAACCAGCAAGGGTGGGCAAGGGATGAACATAATCATCATAATTTCAGCCCTCCTGAAAACTCTCTTTTAAGTTATGACTCTTCAGCAAATTCAGAGTCGAGAGCCGAGCATGTCGACTTGGTTGGAAACCGAATTGCTATCAACAACAACTAG 1131 47.57 MEIKVGTVGGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSATAAVVNDDSVHHCIKDVPKPYFSAFNCNLTFPTNSGLIERVTKLSVLAKEHSPETTSSVPLNSSVNLEKVKNEPTTDTDSNPNPLQTLISDPTVENTNQRSAKRKEREKKGRGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIESILATENEPVLESNFPTMVSPLMWPEIPVNGTRQQYQPQWHFDGSVNQQGWARDEHNHHNFSPPENSLLSYDSSANSESRAEHVDLVGNRIAINNN* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23915884 23920400 - Chy4G084730.1 Chy04g01755 225654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01755 376 CDD bHLH_AtBPE_like 197 282 - -
Chy04g01755 376 Gene3D - 204 277 IPR036638 GO:0046983
Chy04g01755 376 Coils Coil 247 267 - -
Chy04g01755 376 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Chy04g01755 376 MobiDBLite consensus disorder prediction 117 198 - -
Chy04g01755 376 MobiDBLite consensus disorder prediction 334 355 - -
Chy04g01755 376 MobiDBLite consensus disorder prediction 117 164 - -
Chy04g01755 376 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 360 IPR024097 GO:0006355
Chy04g01755 376 SMART finulus 213 263 IPR011598 GO:0046983
Chy04g01755 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Chy04g01755 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Chy04g01755 376 MobiDBLite consensus disorder prediction 180 198 - -
Chy04g01755 376 PANTHER TRANSCRIPTION FACTOR BHLH60 20 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01755 Chy-Chr4:23915884 Chy10g01083 Chy-Chr10:15909181 7.46E-44 dispersed
Chy04g01755 Chy-Chr4:23915884 Chy01g00774 Chy-Chr1:5949888 5.09E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17906 PF00010 HLH 1.50E-05 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01755 - - csv:101205014 697.967