Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01764 ATGCTCCAACAGCGTCTGTTTACGTATTTTACTGTCATTGTCTATTCCACGATTCTGACTTCACTTGCTCGGGCGTTCACTAATCCGCCGGATGATACTGTGTACTGTACAGTTATAGCTCTTCAGGATTTGTATAGTGCTATGAACTACCCACTAGAGCTTAAAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGAGGAATCATGGACTGGAGTGTCTTGCTCCGGTTCTTCTGTAATATACCTTAAACTCCATGGACTAAATCTCACTGGGAATCTTGGAGGGCAGCTCAGCATCCTCATCAATTTGAAGCAATTGGATGTTAGCTCTAATAGACTTACGGGTGAAATTCCGCACAACTTGCCTCCTAATGTGACTCATATAAATATGGCATTCAACCATTTAAGCCAAAATATTCCGCATACTTTATCTTATATGGGAAATCTCCGACATCTAAATCTTAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACTGGTTTACAGAATTTGAGAGAGATGGATTTATCATATAATGACTTTACTGGAGATTTGCCAAGTTCATTTGGTTCCCTGACAAACATCACTAGACTGTTCTTGCAGAATAACAAATTCACTGGATCAGTTGCTTACTTGTCTCACCTTCCATTAATTGACTTGAACATCCAAGACAATTATTTTAGTGGCATTATTCCAGAAAATTTTAGAAATATTCCAAATTTGTGGATTGGGGGCAATAGGTTGCGTCCAGAAGTCAATTCGCCACCCTGGGACTTTCCCCTAGAAAAAACACCTATTGGGCAGAACATCAGTGGTCCTCCAACAACGAAGTCAAACGCCATCCAGAATTATCCCTCTTGGAGTGTAGTCAGGCATGAGAAGAAAAGGCTTGGTCCTGGTGGCATGGTTCTCCTGGTTGGTGGGTTAACACTAGTTGTAACCTTTGCAGCTCTCTTTTTAGTATTTGCCATGAAGAAAGTGCATGAAAATAACATAAATTTGAAGATTGGGAACATATTACCCCGTTCTCTTCCTCTGGACAAAGCTGAAGATGATTCGTCTGCTGCACCAGAAGAAAACTCACAAAACTTTCCCTTGGGTTCTCAACTGATGGGTGTTCCAAGGCCTATACCTTTGTTAAATCACACGAGAACCGAGAAAGTATCTGGAAGAAAAGGTTTCTCAAAGAGATGCAGGATCCTGGTGAGAACAAAAGTTTACACTCTGGCAGAGCTTCAATCCGCTACTAACAACTTTAGTCAAGAGAATCTTCTAGGAGAGGGATCTCTTGGTGCTGTTTATAGGGCTGAATTTCCCGATGGCCAAGTTTTGGCTGTGAAAAATATCCACATGGGAACGCTCTTGTTTACAGAAGAAGAGCAGTTTCTGGATGTGGTATGGACTGCATCCCGTTTGAGGCACCCAAACATCGTTACGCTGATTGGATATTGTGTAGAGTATGGACAACATATACTCGGATATGAATACGTTCGAAATCTTTCTCTTGACGAAGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGCCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATCTGCATACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTAAAGGCTGCAAATATCTTACTGGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTGAGCAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGCTGATAGAGGCTACCTTGCACCTGAACATGGCCAACCAGTATTTGATAATACGAGAAGTGATGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGGAGAAAACCATATGACAATTCGAAACCGAGGAAAGAGCAATTGCTGGTGAAATGGGCTTCATCTCAGCTTCATGTCAACACGAGTTTAGAACAAATGGTTGATCCAAGCATCAAAGGAACATTTTCCTCCAAGGCTCTCTCAAGCTTTGTGGATATTGTCTCCCTTTGTATACAGCCTGTGAAGGAATTTCGGCCACCAATGTCTGAAATAGTGGAACATCTAACAAATCTTCAAAGAAAGATGGAAATGGTGAAATGTGTTGCATCAAATGAAACTGAAGTGAATCCTTTTGAGAAATCTTTCCGTTCTACCAACACTGGCTTTGTAAGTTCTCCAGCATATAGCTATTCTTCTACCCAGAAGGCTACTTGA 2241 41.63 MLQQRLFTYFTVIVYSTILTSLARAFTNPPDDTVYCTVIALQDLYSAMNYPLELKGWRKEGGDPCEESWTGVSCSGSSVIYLKLHGLNLTGNLGGQLSILINLKQLDVSSNRLTGEIPHNLPPNVTHINMAFNHLSQNIPHTLSYMGNLRHLNLSHNTLSGVIGNVFTGLQNLREMDLSYNDFTGDLPSSFGSLTNITRLFLQNNKFTGSVAYLSHLPLIDLNIQDNYFSGIIPENFRNIPNLWIGGNRLRPEVNSPPWDFPLEKTPIGQNISGPPTTKSNAIQNYPSWSVVRHEKKRLGPGGMVLLVGGLTLVVTFAALFLVFAMKKVHENNINLKIGNILPRSLPLDKAEDDSSAAPEENSQNFPLGSQLMGVPRPIPLLNHTRTEKVSGRKGFSKRCRILVRTKVYTLAELQSATNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNIHMGTLLFTEEEQFLDVVWTASRLRHPNIVTLIGYCVEYGQHILGYEYVRNLSLDEALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVSNRVKTKASEIVSADRGYLAPEHGQPVFDNTRSDVYSFGVLLLELVTGRKPYDNSKPRKEQLLVKWASSQLHVNTSLEQMVDPSIKGTFSSKALSSFVDIVSLCIQPVKEFRPPMSEIVEHLTNLQRKMEMVKCVASNETEVNPFEKSFRSTNTGFVSSPAYSYSSTQKAT* 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24002657 24007220 - Chy4G084820.1 Chy04g01764 225663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01764 746 SUPERFAMILY Protein kinase-like (PK-like) 398 698 IPR011009 -
Chy04g01764 746 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
Chy04g01764 746 ProSiteProfiles Protein kinase domain profile. 421 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01764 746 SUPERFAMILY L domain-like 57 244 - -
Chy04g01764 746 Pfam Leucine rich repeat N-terminal domain 40 75 IPR013210 -
Chy04g01764 746 Gene3D Transferase(Phosphotransferase) domain 1 499 722 - -
Chy04g01764 746 Gene3D Ribonuclease Inhibitor 38 265 IPR032675 -
Chy04g01764 746 SMART LRR_typ_2 194 217 IPR003591 -
Chy04g01764 746 SMART LRR_typ_2 146 169 IPR003591 -
Chy04g01764 746 SMART LRR_typ_2 100 124 IPR003591 -
Chy04g01764 746 SMART LRR_typ_2 170 193 IPR003591 -
Chy04g01764 746 Gene3D Phosphorylase Kinase; domain 1 384 498 - -
Chy04g01764 746 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 710 - -
Chy04g01764 746 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 2 ISOFORM X1 10 710 - -
Chy04g01764 746 MobiDBLite consensus disorder prediction 349 369 - -
Chy04g01764 746 Pfam Protein kinase domain 422 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01764 - - - csv:101204194 1429.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00715 Chy-Chr4:8714168 Chy04g01764 Chy-Chr4:24002657 3.38E-155 dispersed
Chy04g01764 Chy-Chr4:24002657 Chy12g00528 Chy-Chr12:7317261 2.98E-180 dispersed
Chy04g01763 Chy-Chr4:23994227 Chy04g01764 Chy-Chr4:24002657 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1247 . . . . Bpe04g01463 . Bma04g01505 . Cmo06g00081 . . . . . . . Cpe08g01391 . . . . . . . . . . . . . . . . . Cone19ag0495 . . . Cme04g02226 . Blo09g00427 Bda03g01600 . . . . . . . . Cma06g00088 . Car06g00077 Car14g00396 Cpe03g00382 . . . . . . . . Cla10g01655 . . . . . . Lsi03g01722 Csa03g03593 Chy04g01764 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy12g00528 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.3e-84 311.2
Chy04g01764 . 9 741 Strubbelig Receptor Gene Family AT5G06820 53.1 1.2e-181 633.6
Chy01g00369 . 31 788 Strubbelig Receptor Gene Family AT4G03390 62.9 2.2e-210 729.2
Chy02g00324 . 17 752 Strubbelig Receptor Gene Family AT4G03390 53.2 8.2e-157 551.2
Chy03g00317 . 20 674 Strubbelig Receptor Gene Family AT3G13065 52.2 4.1e-144 508.8
Chy03g00317 . 22 697 Strubbelig Receptor Gene Family AT1G78980 61.5 1.4e-195 679.9
Chy04g00715 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 2.6e-154 542.7
Chy01g02121 . 24 692 Strubbelig Receptor Gene Family AT1G78980 50.5 9.8e-125 444.5
Chy04g00715 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 8.0e-215 743.8
Chy01g02121 . 8 714 Strubbelig Receptor Gene Family AT1G53730 60.1 3.3e-184 642.1
Chy12g00528 . 5 689 Strubbelig Receptor Gene Family AT1G53730 51.6 1.4e-158 557.0
Chy03g00317 . 15 682 Strubbelig Receptor Gene Family AT1G53730 51.8 1.2e-157 553.9
Chy04g00715 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 7.2e-189 657.5
Chy01g02121 . 6 704 Strubbelig Receptor Gene Family AT3G14350 55.1 4.9e-169 591.7
Chy12g00528 . 138 712 Strubbelig Receptor Gene Family AT4G22130 60.3 1.1e-179 626.7
Chy04g00715 . 398 726 Strubbelig Receptor Gene Family AT4G22130 63.4 5.3e-121 431.8
Chy01g02121 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.2 5.1e-116 415.2
Chy01g00369 . 456 780 Strubbelig Receptor Gene Family AT4G22130 57.7 4.3e-107 385.6
Chy03g00317 . 386 696 Strubbelig Receptor Gene Family AT4G22130 56.9 2.2e-98 356.7
Chy02g00324 . 464 752 Strubbelig Receptor Gene Family AT4G22130 60.1 2.8e-98 356.3
Chy04g01764 . 393 715 Strubbelig Receptor Gene Family AT4G22130 50.5 2.9e-87 319.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71218 PF00069 Pkinase 2.80E-33 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01764 Chy_Chr04 FPKM 18.860491 21.825726 20.494741 20.516758 30.551146 32.977142 32.688988 24.003994 22.03196 21.291628