Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01778 ATGGCGTCGGCTTGTTGGAAACCAGTGAGGCGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGTTCTTTAGAGGATCCTTTATTGTGGAGCAGAGAGCTTGAAAAGCATTCTTATGGTGAATTTTCTTTTGCTGTGGTTCAGGCTAATGAGGTAATTGAGGATAATAGTCAGGTTGAGACTGGCCCTGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTTATCTGTGATCATCTTTTCAGGAATTTAATGAGTGAGTCTTCAACAAGGACAGTGCACAAAGATAGATTTTATAGGAAGAGGAGGGAGGTGTGGAGAGATGGGGAACACTCAAAACTGGGTGTCATTCTTTGGAACATAGGGCTTGCTCAAGAAAATGGAAACATAACTGAAGATATTCTTCGAAGTGCAGTTTATGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGACGGTCATGGGGAATAAAACCAACAATTGCAGCTATGGGATCTTGTTGTCTGGTGGGAGTTATCTGGAGAGGTACATTATTCGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCACAATGCAAGTATCGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCTGATGACTCACATATTGTTGTTATGAAGCATGGAGTTTGGCGTATTAAAGGCATAATTCAGGTTTCCAGATCAATAGGTGATGCATATTTAAAAAAGCCAGAGTTTTCTCTCGATCCATCCTTTCCACGATTCCACCTTGCAGAGCCTCTTCGACGGCCTGTTCTTACTGCAGAACCATCGTTAAGTACAAGAGTTCTGCAACCTAATGACAAATTTCTCATATTTGCATCTGATGGCCTCTGGGAGCATCTAACGAATCAACAAGCAGTTGAGATTGTGTATAATAACCCAAGAGCAGGAATTGCAAAAAGACTCGTTAAAACAGCACTAACTGAGGCTGCAAGGAAGAGGGAAATGAGATACGATGATCTGAAGAAGCTCGAAAAGGGCATACGACGGTTCTTTCACGATGATATCACGGTTGTTGTCATATTTCTGGACCATGAGTTGCAAGGGAAGAAAGCACGTGTACCAGAGTTATCCGTTCGTGGGTTTACCGACACCGTTGGACCATCAAATATCAATGTTCTTCGAGGCATCGATGAGAATGGAAGGTCTGTTGGCTGA 1260 43.41 MASACWKPVRRYARMNKDDDEDCSLEDPLLWSRELEKHSYGEFSFAVVQANEVIEDNSQVETGPDATFVGVYDGHGGPDASRFICDHLFRNLMSESSTRTVHKDRFYRKRREVWRDGEHSKLGVILWNIGLAQENGNITEDILRSAVYATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLFVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKKPEFSLDPSFPRFHLAEPLRRPVLTAEPSLSTRVLQPNDKFLIFASDGLWEHLTNQQAVEIVYNNPRAGIAKRLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDHELQGKKARVPELSVRGFTDTVGPSNINVLRGIDENGRSVG* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24116138 24118995 + Chy4G084960.1 Chy04g01778 225677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01778 419 Gene3D - 22 387 IPR036457 -
Chy04g01778 419 ProSiteProfiles PPM-type phosphatase domain profile. 42 377 IPR001932 -
Chy04g01778 419 SMART PP2C_4 36 375 IPR001932 -
Chy04g01778 419 CDD PP2Cc 40 377 IPR001932 -
Chy04g01778 419 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 129 397 - -
Chy04g01778 419 PANTHER ALPHABET, ISOFORM E-RELATED 2 101 - -
Chy04g01778 419 PANTHER ALPHABET, ISOFORM E-RELATED 129 397 - -
Chy04g01778 419 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
Chy04g01778 419 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 2 101 - -
Chy04g01778 419 SUPERFAMILY PP2C-like 45 378 IPR036457 -
Chy04g01778 419 Pfam Protein phosphatase 2C 62 345 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00118 Chy-Chr1:763429 Chy04g01778 Chy-Chr4:24116138 6.84E-144 dispersed
Chy04g01778 Chy-Chr4:24116138 Chy04g02107 Chy-Chr4:26420099 3.74E-138 dispersed
Chy04g01778 Chy-Chr4:24116138 Chy11g00244 Chy-Chr11:2291313 1.39E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01778 K01102 - csv:101222146 742.265