Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01779 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCACCAAGGGCTGTATTCCCTAGCATTGTTGGTCGTCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATATTAACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCATTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAAACTTTCAACACTCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGATTTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATATTGACTGAACGTGGCTACTCATTCACCACCACCGCCGAGCGTGAAATTGTGAGAGACATGAAGGAGAAACTAGCTTATATAGCCCTGGATTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATCGGTGCTGAAAGATTCCGATGCCCTGAAGTTCTCTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAACTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGCAACATTGTCCTCAGTGGTGGTTCCACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTAGCTCCAAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1134 46.3 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24120671 24123091 - Chy4G084970.1 Chy04g01779 225678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01779 377 PANTHER ACTIN 3 1 376 - -
Chy04g01779 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Chy04g01779 377 PANTHER ACTIN 1 376 IPR004000 -
Chy04g01779 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Chy04g01779 377 Gene3D - 10 371 - -
Chy04g01779 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Chy04g01779 377 Gene3D - 140 340 - -
Chy04g01779 377 SMART actin_3 7 377 IPR004000 -
Chy04g01779 377 Pfam Actin 5 377 IPR004000 -
Chy04g01779 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Chy04g01779 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Chy04g01779 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Chy04g01779 377 PRINTS Actin signature 28 37 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 51 62 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 63 85 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 117 130 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 142 161 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 238 254 IPR004000 -
Chy04g01779 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00298 Chy-Chr1:2110223 Chy04g01779 Chy-Chr4:24120671 0 dispersed
Chy02g01031 Chy-Chr2:7030507 Chy04g01779 Chy-Chr4:24120671 0 dispersed
Chy02g02375 Chy-Chr2:27575528 Chy04g01779 Chy-Chr4:24120671 1.09E-12 dispersed
Chy03g00095 Chy-Chr3:950914 Chy04g01779 Chy-Chr4:24120671 1.27E-52 dispersed
Chy04g01779 Chy-Chr4:24120671 Chy09g00409 Chy-Chr9:3590471 0 dispersed
Chy06g01882 Chy-Chr6:22684874 Chy04g01779 Chy-Chr4:24120671 1.23E-34 dispersed
Chy10g00535 Chy-Chr10:11933729 Chy04g01779 Chy-Chr4:24120671 1.79E-18 dispersed
Chy04g01779 Chy-Chr4:24120671 Chy08g00757 Chy-Chr8:15277610 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01779 K10355 - psom:113309355 750.74