Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01779 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCACCAAGGGCTGTATTCCCTAGCATTGTTGGTCGTCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATATTAACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCATTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAAACTTTCAACACTCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGATTTGGCTGGCCGTGATCTCACAGATGCTCTAATGAAAATATTGACTGAACGTGGCTACTCATTCACCACCACCGCCGAGCGTGAAATTGTGAGAGACATGAAGGAGAAACTAGCTTATATAGCCCTGGATTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATCGGTGCTGAAAGATTCCGATGCCCTGAAGTTCTCTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAACTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTATGGCAACATTGTCCTCAGTGGTGGTTCCACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTAGCTCCAAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1134 46.3 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24120671 24123091 - Chy4G084970.1 Chy04g01779 225678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01779 377 PANTHER ACTIN 3 1 376 - -
Chy04g01779 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Chy04g01779 377 PANTHER ACTIN 1 376 IPR004000 -
Chy04g01779 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Chy04g01779 377 Gene3D - 10 371 - -
Chy04g01779 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Chy04g01779 377 Gene3D - 140 340 - -
Chy04g01779 377 SMART actin_3 7 377 IPR004000 -
Chy04g01779 377 Pfam Actin 5 377 IPR004000 -
Chy04g01779 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Chy04g01779 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Chy04g01779 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Chy04g01779 377 PRINTS Actin signature 28 37 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 51 62 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 63 85 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 117 130 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 142 161 IPR004000 -
Chy04g01779 377 PRINTS Actin signature 238 254 IPR004000 -
Chy04g01779 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01779 K10355 ACTF; actin, other eukaryote - psom:113309355 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00298 Chy-Chr1:2110223 Chy04g01779 Chy-Chr4:24120671 0 dispersed
Chy02g01031 Chy-Chr2:7030507 Chy04g01779 Chy-Chr4:24120671 0 dispersed
Chy02g02375 Chy-Chr2:27575528 Chy04g01779 Chy-Chr4:24120671 1.09E-12 dispersed
Chy03g00095 Chy-Chr3:950914 Chy04g01779 Chy-Chr4:24120671 1.27E-52 dispersed
Chy04g01779 Chy-Chr4:24120671 Chy09g00409 Chy-Chr9:3590471 0 dispersed
Chy06g01882 Chy-Chr6:22684874 Chy04g01779 Chy-Chr4:24120671 1.23E-34 dispersed
Chy10g00535 Chy-Chr10:11933729 Chy04g01779 Chy-Chr4:24120671 1.79E-18 dispersed
Chy04g01779 Chy-Chr4:24120671 Chy08g00757 Chy-Chr8:15277610 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT2G37620 97.1 1.9e-215 745.0
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 5.5e-215 743.4
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT2G37620 94.4 1.1e-212 735.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT2G37620 95.8 1.5e-212 735.3
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT2G37620 90.3 1.5e-209 725.3
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.0e-200 693.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT5G59370 96.8 2.7e-214 741.1
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT5G59370 97.1 4.7e-214 740.3
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.8e-213 738.4
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT5G59370 93.9 4.1e-210 727.2
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT5G59370 90.8 1.2e-209 725.7
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 6.7e-197 683.3
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G46520 97.1 1.2e-214 742.3
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G46520 97.4 2.1e-214 741.5
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 7.9e-214 739.6
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G46520 94.2 1.8e-210 728.4
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G46520 91.0 5.3e-210 726.9
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.0e-197 684.5
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 2.5e-215 744.6
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 9.4e-215 742.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G12110 96.0 2.3e-213 738.0
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G12110 95.2 8.8e-213 736.1
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G12110 91.3 3.7e-211 730.7
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 1.9e-199 691.8
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G18780 93.1 3.5e-209 724.2
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G18780 92.6 3.5e-209 724.2
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.9e-208 721.1
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 3.8e-208 720.7
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G18780 86.8 2.0e-204 708.4
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.4e-196 680.6
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT1G49240 92.9 1.2e-209 725.7
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 4.5e-209 723.8
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.0e-208 722.6
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.3e-208 722.2
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT1G49240 87.1 6.7e-205 709.9
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.5e-196 682.2
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.7e-214 740.3
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.7e-214 740.3
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.4e-213 738.8
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT5G09810 95.5 4.4e-212 733.8
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT5G09810 90.3 2.6e-209 724.5
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 2.8e-203 704.5
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT2G19760 76.5 1.3e-57 219.2
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT2G19760 76.1 1.2e-55 212.6
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.9e-54 208.0
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT4G29350 78.0 7.4e-58 219.9
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT4G29350 75.0 4.5e-55 210.7
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT4G29350 74.6 2.2e-54 208.4
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 1.4e-64 242.3
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT4G29340 70.4 8.6e-54 206.5
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT4G29340 68.9 8.1e-52 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01779 Chy_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.040419 0.045319