Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01788 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCAAATTCGGTTCCAAATGAAGATGTCAATTTGGCTGATTTGACTGAGGAACCCGTTCATAGATTTGGGGAAACTATCAGGTTTAGGACGAGACAACGGTGGAGAAGGCGTCAAGTCCAAATCCCTCCTGAGACTCAGAATATCACGATGGAATTGAGTGAAATCATGGTCAATTCAGGCAATGGGAATTCATTACAGCCATTACAACCTGGTGAGGGAAGTATTACTGCTGAGGAGAGGAAAAATGAGACAGGGAAAACTTGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAAACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGCAATATATGTCTGGATTTGTCTAGAGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGCTGGCCATGCCTTTATCGATGGTTACATCTACATTCAGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACAAAAAACGTGACTCCAATTTATGGGCGTGGCAGCAATACACCTGTGACAGAGGAGGATGCTACACTTAAGATTCCTCCAAGGCCCCATGCTCGAAAGGTTGAAAGTTTGAGGCAAACCATCCAGAGGACTCCATTTAGTTTCCCAGTGGAGGATATGATTCGGCGATTAGGAAACAGATTCGATTTCAATCGTGATCTAGACCAACCACCAGAGCCAGACAGCTCGAATGAAACATTTGGTAGATCTCCAACATTGTTGAATAGGATTTTAACATCCAGGGGTATTCGTAGAGAACGAATTTCATTGCCTCATGATGATGCAGGAGATTTAGCACACACTGATGTGTCTAGCATTGAGGCAGGGGAAACACGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACCGAACACGAGTTTCTTCTCTTACTTCTGCGCTTAATTCTGCTGATAGGCTTCCAGATGGTTTTTTGTATACTGATCCGCTCATCCCTAGAAGTCAAGAGCAGCCTCCACCTGTTGAGGATAGGGATTCTTTCTCTAGTATTGCTGCTGTCATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTTTCCATTTCAACATCATCCTCCAGAAGGAGAAATGATGCTTTACAAGTTTCGGATGTAGACAGCGGGAACTCTCGAGCACCCAGGCGGAGAAGATTAGCTTGA 1272 43.47 MGDEIFDAMNLDLNLGPIPEPLSNSVPNEDVNLADLTEEPVHRFGETIRFRTRQRWRRRQVQIPPETQNITMELSEIMVNSGNGNSLQPLQPGEGSITAEERKNETGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLSRDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKNVTPIYGRGSNTPVTEEDATLKIPPRPHARKVESLRQTIQRTPFSFPVEDMIRRLGNRFDFNRDLDQPPEPDSSNETFGRSPTLLNRILTSRGIRRERISLPHDDAGDLAHTDVSSIEAGETRLQSLPVLRSLLHRTRVSSLTSALNSADRLPDGFLYTDPLIPRSQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRNDALQVSDVDSGNSRAPRRRRLA* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24171891 24173162 + Chy4G085060.1 Chy04g01788 225687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01788 423 SUPERFAMILY RING/U-box 137 194 - -
Chy04g01788 423 SMART ring_2 141 181 IPR001841 -
Chy04g01788 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 420 IPR045103 GO:0005783|GO:0006511|GO:0061630
Chy04g01788 423 MobiDBLite consensus disorder prediction 250 269 - -
Chy04g01788 423 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Chy04g01788 423 CDD RING-HC_AtRMA_like 139 183 - -
Chy04g01788 423 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Chy04g01788 423 PANTHER OS01G0830200 PROTEIN 19 420 - -
Chy04g01788 423 MobiDBLite consensus disorder prediction 392 412 - -
Chy04g01788 423 MobiDBLite consensus disorder prediction 83 107 - -
Chy04g01788 423 MobiDBLite consensus disorder prediction 392 423 - -
Chy04g01788 423 Pfam Zinc finger, C3HC4 type (RING finger) 141 186 - -
Chy04g01788 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 200 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00970 Chy-Chr2:6454953 Chy04g01788 Chy-Chr4:24171891 4.66E-21 dispersed
Chy04g01313 Chy-Chr4:19650662 Chy04g01788 Chy-Chr4:24171891 3.99E-38 dispersed
Chy04g01788 Chy-Chr4:24171891 Chy12g00937 Chy-Chr12:14738974 5.91E-28 dispersed
Chy04g01788 Chy-Chr4:24171891 Chy03g01490 Chy-Chr3:17316482 3.50E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01788 K10666 - csv:101220497 818.92