Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01850 ATGAACGATTTATTCTCCTCTCGCTCCTTTTCCCGCGACGCCCGTGTCGTTGAAATGGGCAACAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGATAAGTTCTTTGAAGATGTTGAGTCTGTTAAAGACGAGCTCAAGGAGCTTGAACGACTTTACTCCAACCTTCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCTGTCAAGGACCTCCGATCTCGCATGGATACTGATGTTTCTCTTGCTCTTAAGAAGGCTAAACTCATTAAGGTTCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAATCGGAGCCTCCCTGGTTGTGGTCCTGGTTCCTCTTCTGATCGAACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGATTCTATGGAGAGTTTTAACAATCTTAGGCAACAGATCTCCTCTGAGTACAGGGAGACCGTTCAGCGAAGATATTACACTGTTACTGGTGAAAATCCGGACGAGAAAACCATTGATGTCTTGATATCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAACTGCACCAAGTTTTCATGGACATGGCAGTTTTAGTGCACGAACAGGGCGAGAAACTCGACGACATCGAAAGCCAAGTGATCAGGGCCCATTCTTTTGTCCGAGGTGGCACGCAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTTTGCTACTCATTGTCTTGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAAAATAACAGTAGTTCACCCGCAACACCCTAA 924 46.54 MNDLFSSRSFSRDARVVEMGNNASSSPTAVNLDKFFEDVESVKDELKELERLYSNLHDSHEQSKTLHNAKAVKDLRSRMDTDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVIRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLLIVLVIVLSLQPWKKNNSSSPATP* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24681494 24683231 - Chy4G085680.1 Chy04g01850 225749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01850 307 Coils Coil 32 59 - -
Chy04g01850 307 Pfam SNARE domain 238 290 IPR000727 -
Chy04g01850 307 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Chy04g01850 307 PANTHER SYNTAXIN 9 295 IPR045242 -
Chy04g01850 307 SMART tSNARE_6 197 264 IPR000727 -
Chy04g01850 307 CDD SynN 32 189 IPR006011 GO:0016020
Chy04g01850 307 Gene3D - 30 162 - -
Chy04g01850 307 Coils Coil 205 225 - -
Chy04g01850 307 Coils Coil 127 151 - -
Chy04g01850 307 ProSitePatterns Syntaxin / epimorphin family signature. 208 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy04g01850 307 Gene3D - 198 294 - -
Chy04g01850 307 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 295 - -
Chy04g01850 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Chy04g01850 307 CDD SNARE_syntaxin1-like 201 263 - -
Chy04g01850 307 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Chy04g01850 307 SMART SynN_4 27 153 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01850 Chy-Chr4:24681494 Chy06g02160 Chy-Chr6:25892952 4.32E-10 dispersed
Chy02g00640 Chy-Chr2:3907457 Chy04g01850 Chy-Chr4:24681494 3.66E-59 transposed
Chy08g00517 Chy-Chr8:12391637 Chy04g01850 Chy-Chr4:24681494 4.23E-79 transposed
Chy11g00597 Chy-Chr11:6820796 Chy04g01850 Chy-Chr4:24681494 1.55E-28 transposed
Chy12g00974 Chy-Chr12:15035977 Chy04g01850 Chy-Chr4:24681494 3.38E-123 transposed
Chy04g01850 Chy-Chr4:24681494 Chy08g00980 Chy-Chr8:17055773 1.04E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01850 K08486 - csv:101208931 572.392