Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01850 ATGAACGATTTATTCTCCTCTCGCTCCTTTTCCCGCGACGCCCGTGTCGTTGAAATGGGCAACAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGATAAGTTCTTTGAAGATGTTGAGTCTGTTAAAGACGAGCTCAAGGAGCTTGAACGACTTTACTCCAACCTTCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCTGTCAAGGACCTCCGATCTCGCATGGATACTGATGTTTCTCTTGCTCTTAAGAAGGCTAAACTCATTAAGGTTCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAATCGGAGCCTCCCTGGTTGTGGTCCTGGTTCCTCTTCTGATCGAACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGATTCTATGGAGAGTTTTAACAATCTTAGGCAACAGATCTCCTCTGAGTACAGGGAGACCGTTCAGCGAAGATATTACACTGTTACTGGTGAAAATCCGGACGAGAAAACCATTGATGTCTTGATATCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAACTGCACCAAGTTTTCATGGACATGGCAGTTTTAGTGCACGAACAGGGCGAGAAACTCGACGACATCGAAAGCCAAGTGATCAGGGCCCATTCTTTTGTCCGAGGTGGCACGCAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTTTGCTACTCATTGTCTTGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAAAATAACAGTAGTTCACCCGCAACACCCTAA 924 46.54 MNDLFSSRSFSRDARVVEMGNNASSSPTAVNLDKFFEDVESVKDELKELERLYSNLHDSHEQSKTLHNAKAVKDLRSRMDTDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVIRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLLIVLVIVLSLQPWKKNNSSSPATP* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24681494 24683231 - Chy4G085680.1 Chy04g01850 225749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01850 307 Coils Coil 32 59 - -
Chy04g01850 307 Pfam SNARE domain 238 290 IPR000727 -
Chy04g01850 307 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Chy04g01850 307 PANTHER SYNTAXIN 9 295 IPR045242 -
Chy04g01850 307 SMART tSNARE_6 197 264 IPR000727 -
Chy04g01850 307 CDD SynN 32 189 IPR006011 GO:0016020
Chy04g01850 307 Gene3D - 30 162 - -
Chy04g01850 307 Coils Coil 205 225 - -
Chy04g01850 307 Coils Coil 127 151 - -
Chy04g01850 307 ProSitePatterns Syntaxin / epimorphin family signature. 208 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy04g01850 307 Gene3D - 198 294 - -
Chy04g01850 307 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 295 - -
Chy04g01850 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Chy04g01850 307 CDD SNARE_syntaxin1-like 201 263 - -
Chy04g01850 307 SUPERFAMILY t-snare proteins 31 257 IPR010989 GO:0016020|GO:0016192
Chy04g01850 307 SMART SynN_4 27 153 IPR006011 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01850 K08486 STX1B_2_3; syntaxin 1B/2/3 - csv:101208931 572.392
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01850 Chy-Chr4:24681494 Chy06g02160 Chy-Chr6:25892952 4.32E-10 dispersed
Chy02g00640 Chy-Chr2:3907457 Chy04g01850 Chy-Chr4:24681494 3.66E-59 transposed
Chy08g00517 Chy-Chr8:12391637 Chy04g01850 Chy-Chr4:24681494 4.23E-79 transposed
Chy11g00597 Chy-Chr11:6820796 Chy04g01850 Chy-Chr4:24681494 1.55E-28 transposed
Chy12g00974 Chy-Chr12:15035977 Chy04g01850 Chy-Chr4:24681494 3.38E-123 transposed
Chy04g01850 Chy-Chr4:24681494 Chy08g00980 Chy-Chr8:17055773 1.04E-139 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01173 . 476 779 SNARE and Associated Proteins AT3G24350 62.5 3.1e-90 328.9
Chy08g00517 . 1 310 SNARE and Associated Proteins AT1G08560 66.4 1.4e-99 359.8
Chy02g00640 . 1 303 SNARE and Associated Proteins AT2G18260 53.8 3.7e-84 308.5
Chy04g01850 . 22 279 SNARE and Associated Proteins AT3G11820 80.6 3.0e-113 405.2
Chy08g00980 . 25 284 SNARE and Associated Proteins AT3G11820 70.0 3.5e-98 355.1
Chy12g00974 . 31 281 SNARE and Associated Proteins AT3G11820 65.3 2.4e-91 332.4
Chy04g01397 . 21 280 SNARE and Associated Proteins AT3G11820 51.5 7.2e-67 251.1
Chy04g01850 . 31 279 SNARE and Associated Proteins AT3G52400 69.5 3.8e-90 328.6
Chy08g00980 . 36 284 SNARE and Associated Proteins AT3G52400 66.7 1.7e-85 313.2
Chy12g00974 . 1 281 SNARE and Associated Proteins AT3G52400 56.0 2.1e-80 296.2
Chy12g00974 . 1 299 SNARE and Associated Proteins AT4G03330 67.9 4.0e-107 384.8
Chy04g01850 . 1 278 SNARE and Associated Proteins AT4G03330 56.9 1.9e-80 296.2
Chy08g00980 . 1 302 SNARE and Associated Proteins AT4G03330 54.0 1.8e-78 289.7
Chy04g01397 . 34 280 SNARE and Associated Proteins AT4G03330 54.7 9.1e-67 250.8
Chy12g00974 . 1 299 SNARE and Associated Proteins AT1G61290 79.6 1.2e-127 453.0
Chy04g01850 . 1 279 SNARE and Associated Proteins AT1G61290 62.6 2.2e-89 325.9
Chy08g00980 . 1 296 SNARE and Associated Proteins AT1G61290 55.7 1.3e-81 300.1
Chy04g01397 . 35 280 SNARE and Associated Proteins AT1G61290 50.4 6.7e-62 234.6
Chy12g00974 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 1.2e-124 443.0
Chy04g01850 . 1 279 SNARE and Associated Proteins AT1G11250 62.4 2.3e-91 332.4
Chy08g00980 . 1 296 SNARE and Associated Proteins AT1G11250 55.4 3.0e-83 305.4
Chy04g01397 . 35 280 SNARE and Associated Proteins AT1G11250 51.6 5.4e-64 241.5
Chy04g01397 . 3 299 SNARE and Associated Proteins AT3G03800 73.1 3.0e-110 395.2
Chy11g00597 . 42 297 SNARE and Associated Proteins AT3G03800 58.2 3.3e-77 285.4
Chy04g01397 . 3 198 SNARE and Associated Proteins AT5G08080 76.5 6.6e-75 277.3
Chy11g00597 . 24 214 SNARE and Associated Proteins AT5G08080 59.2 3.9e-51 198.4
Chy06g02160 . 1 256 SNARE and Associated Proteins AT5G16830 58.8 1.4e-74 276.6
Chy06g02160 . 1 256 SNARE and Associated Proteins AT5G46860 65.2 6.9e-79 290.8
Chy06g02160 . 1 256 SNARE and Associated Proteins AT4G17730 60.9 3.3e-73 271.9
Chy06g02160 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 9.2e-52 201.1
Chy10g00436 . 1 336 SNARE and Associated Proteins AT5G05760 65.6 3.9e-111 398.3
Chy03g01173 . 476 779 SNARE and Associated Proteins AT3G24350 62.5 3.1e-90 328.9
Chy05g01060 . 1 317 SNARE and Associated Proteins AT5G26980 75.7 1.5e-123 439.5
Chy01g01727 . 1 310 SNARE and Associated Proteins AT5G26980 66.6 1.6e-101 366.3
Chy01g01727 . 1 309 SNARE and Associated Proteins AT4G02195 67.4 9.8e-104 373.6
Chy05g01060 . 1 317 SNARE and Associated Proteins AT4G02195 62.4 1.5e-99 359.8
Chy05g01060 . 1 317 SNARE and Associated Proteins AT3G05710 74.5 1.2e-125 446.4
Chy01g01727 . 1 310 SNARE and Associated Proteins AT3G05710 63.7 4.1e-97 351.7
Chy01g01059 . 1 234 SNARE and Associated Proteins AT1G16240 73.1 1.5e-90 329.3
Chy06g01863 . 4 231 SNARE and Associated Proteins AT1G16240 65.8 5.6e-77 284.3
Chy01g01059 . 1 234 SNARE and Associated Proteins AT1G79590 72.6 1.1e-89 326.6
Chy06g01863 . 4 231 SNARE and Associated Proteins AT1G79590 65.4 3.8e-77 285.0
Chy11g01970 . 106 260 SNARE and Associated Proteins AT1G28490 69.7 2.9e-53 205.3
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G09740 77.9 7.5e-110 393.7
Chy04g02075 . 1 235 SNARE and Associated Proteins AT3G09740 76.8 2.1e-96 349.0
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G45280 65.5 4.0e-87 318.2
Chy04g02075 . 1 230 SNARE and Associated Proteins AT3G45280 64.4 5.1e-74 274.6
Chy04g00793 . 1 261 SNARE and Associated Proteins AT3G61450 68.9 7.9e-96 347.1
Chy04g02075 . 1 235 SNARE and Associated Proteins AT3G61450 66.4 3.8e-82 301.6
Chy03g00164 . 65 309 SNARE and Associated Proteins AT1G51740 73.3 1.7e-92 335.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002313 5 3 2 3 3 1 2 1 1 2 1 2 2 2 2 2 2 2 3 1 3 2 2 2 3 1 2 3 2 0 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01850 Chy_Chr04 FPKM 260.796844 263.110931 218.572556 204.466614 296.033661 303.919403 285.727386 232.946579 240.199753 234.151611