Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy04g01850 | ATGAACGATTTATTCTCCTCTCGCTCCTTTTCCCGCGACGCCCGTGTCGTTGAAATGGGCAACAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGATAAGTTCTTTGAAGATGTTGAGTCTGTTAAAGACGAGCTCAAGGAGCTTGAACGACTTTACTCCAACCTTCATGACTCCCATGAACAGAGCAAGACCCTTCACAATGCTAAGGCTGTCAAGGACCTCCGATCTCGCATGGATACTGATGTTTCTCTTGCTCTTAAGAAGGCTAAACTCATTAAGGTTCGATTGGAGGCTCTTGATCGCTCCAATGCTGCCAATCGGAGCCTCCCTGGTTGTGGTCCTGGTTCCTCTTCTGATCGAACTCGGACTTCTGTAGTCAACGGTTTGAGGAAGAAATTGCAGGATTCTATGGAGAGTTTTAACAATCTTAGGCAACAGATCTCCTCTGAGTACAGGGAGACCGTTCAGCGAAGATATTACACTGTTACTGGTGAAAATCCGGACGAGAAAACCATTGATGTCTTGATATCTACAGGTGAAAGTGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGTGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAGGAACCTCAAAGAACTGCACCAAGTTTTCATGGACATGGCAGTTTTAGTGCACGAACAGGGCGAGAAACTCGACGACATCGAAAGCCAAGTGATCAGGGCCCATTCTTTTGTCCGAGGTGGCACGCAGGAGTTGACAACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACAATTATTGCCATCATCATTTTGCTACTCATTGTCTTGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAAAATAACAGTAGTTCACCCGCAACACCCTAA | 924 | 46.54 | MNDLFSSRSFSRDARVVEMGNNASSSPTAVNLDKFFEDVESVKDELKELERLYSNLHDSHEQSKTLHNAKAVKDLRSRMDTDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYYTVTGENPDEKTIDVLISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESQVIRAHSFVRGGTQELTTARVYQKNTRKWTIIAIIILLLIVLVIVLSLQPWKKNNSSSPATP* | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24681494 | 24683231 | - | Chy4G085680.1 | Chy04g01850 | 225749 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy04g01850 | 307 | Coils | Coil | 32 | 59 | - | - | |
Chy04g01850 | 307 | Pfam | SNARE domain | 238 | 290 | IPR000727 | - | |
Chy04g01850 | 307 | Pfam | Syntaxin | 34 | 237 | IPR006011 | GO:0016020 | |
Chy04g01850 | 307 | PANTHER | SYNTAXIN | 9 | 295 | IPR045242 | - | |
Chy04g01850 | 307 | SMART | tSNARE_6 | 197 | 264 | IPR000727 | - | |
Chy04g01850 | 307 | CDD | SynN | 32 | 189 | IPR006011 | GO:0016020 | |
Chy04g01850 | 307 | Gene3D | - | 30 | 162 | - | - | |
Chy04g01850 | 307 | Coils | Coil | 205 | 225 | - | - | |
Chy04g01850 | 307 | Coils | Coil | 127 | 151 | - | - | |
Chy04g01850 | 307 | ProSitePatterns | Syntaxin / epimorphin family signature. | 208 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Chy04g01850 | 307 | Gene3D | - | 198 | 294 | - | - | |
Chy04g01850 | 307 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 9 | 295 | - | - | |
Chy04g01850 | 307 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 202 | 264 | IPR000727 | - | |
Chy04g01850 | 307 | CDD | SNARE_syntaxin1-like | 201 | 263 | - | - | |
Chy04g01850 | 307 | SUPERFAMILY | t-snare proteins | 31 | 257 | IPR010989 | GO:0016020|GO:0016192 | |
Chy04g01850 | 307 | SMART | SynN_4 | 27 | 153 | IPR006011 | GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g01850 | Chy-Chr4:24681494 | Chy06g02160 | Chy-Chr6:25892952 | 4.32E-10 | dispersed | |
Chy02g00640 | Chy-Chr2:3907457 | Chy04g01850 | Chy-Chr4:24681494 | 3.66E-59 | transposed | |
Chy08g00517 | Chy-Chr8:12391637 | Chy04g01850 | Chy-Chr4:24681494 | 4.23E-79 | transposed | |
Chy11g00597 | Chy-Chr11:6820796 | Chy04g01850 | Chy-Chr4:24681494 | 1.55E-28 | transposed | |
Chy12g00974 | Chy-Chr12:15035977 | Chy04g01850 | Chy-Chr4:24681494 | 3.38E-123 | transposed | |
Chy04g01850 | Chy-Chr4:24681494 | Chy08g00980 | Chy-Chr8:17055773 | 1.04E-139 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy04g01850 | K08486 | - | csv:101208931 | 572.392 |