Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01856 ATGGCGTCGAACGTTTCCCCACTCCTAAACCCCCCCATTCATAAATCCCAAATCCTTCACATTATTTCCACTTCCAACACTTCCCCTTCTTCCCAAATCTCCTCAATTCGCCGTCTCCGCTCCATTTCCGCCGAGTCTGAAACTAATCGCCGATGCGTTGAATGCGCCGGTGCGCCGGAGTTTTTAGTCTCTGTTATTGTGGGTTCTGATTCCTCGGCTTCTCATGAAGCCCTCTACACTCTTCATAACCTCCGTCTCTCTGATTCAACGTTTAAATCATTGGCTACCCGCCCTGAATTCCTCGAGTCCTTGACCGATTTCATGAAATTACAACAGGGTACTCATGAATCGTCCAGAACGTACGCGGTGTTGATTTTGAAATCGATTGTTGAAGTCGCTGACCCAATTCAACTAAGCTTCTTGAAACCCGAATTGTTTGTGCAAATCGTTGAGATTTTGAAAGATCGATCATCCTCTCAACAGATTTTCAAAGCGGCATTGGGTATTTTGATTGCGGTGAGTCCATTGGGGAGAAACAGACTGAAGGCAGTGGAAGCAGGGGGAGTTGGGGCTTTGGTTGAGATTTTACTGTCGTCGCCGGAAAAAAGAGTATGTGAAATGACATTGACGGCGATGGATATACTGTGTGGGTGTGCGGATGGAAGAGCGGCGCTGTTGGCACACGGCGGAGGGATGGCGGTGGTTTCGAAGAAGATATTGAGAGTGTCGCAATTGGGGAGTGAAAGGGCGGTGAGAATATTGTATTCGGTGGCTAAATTCTCAGGAAGTCCTGCGGTGTTGATGGAAATGGCGCAACTGGGGATTGTGGCAAAGCTATGTTTGGTTCTGCAAATTGAAAATGGAGGCAAGACGAAGGAGAAAGCTAAAGAGATTTTGAAAATGCATTCTCGTCTTTGGAAGAACTCACCTTGTATTCCTTCTAAATTGGCTTCTTCATATCCTACAAATTAA 972 46.4 MASNVSPLLNPPIHKSQILHIISTSNTSPSSQISSIRRLRSISAESETNRRCVECAGAPEFLVSVIVGSDSSASHEALYTLHNLRLSDSTFKSLATRPEFLESLTDFMKLQQGTHESSRTYAVLILKSIVEVADPIQLSFLKPELFVQIVEILKDRSSSQQIFKAALGILIAVSPLGRNRLKAVEAGGVGALVEILLSSPEKRVCEMTLTAMDILCGCADGRAALLAHGGGMAVVSKKILRVSQLGSERAVRILYSVAKFSGSPAVLMEMAQLGIVAKLCLVLQIENGGKTKEKAKEILKMHSRLWKNSPCIPSKLASSYPTN* 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24750355 24751326 + Chy4G085740.1 Chy04g01856 225755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01856 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 10 321 - -
Chy04g01856 323 SUPERFAMILY ARM repeat 19 289 IPR016024 -
Chy04g01856 323 Gene3D - 13 308 IPR011989 -
Chy04g01856 323 PANTHER WDSAM1 PROTEIN 10 321 IPR045185 GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01856 Chy-Chr4:24750355 Chy08g00534 Chy-Chr8:12687813 8.41E-91 dispersed
Chy04g01856 Chy-Chr4:24750355 Chy05g00202 Chy-Chr5:1692654 2.56E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01856 - - csv:101208445 555.829