Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01857 ATGGCGACTTACCTTCATGGCAATTCTGATCAATTCCAATCCTCTGATGGTGGCCTTCAAACTCTTGTCTTAATGAATCCAACCTATGTTCAATTCTCCGATACCACTCCGCCTCCTCCTCCTCCTTCCCACCCTAATCTCCTCTTCTTCAATTCCCCTTCTTCCACAGCAAATACCTTCACTACACTCACACAACCCCCTCCTTCCTCTCATACCCAACAGTTTGTTGGAATTCCATTACAGACCACATCGGCCGCTTCCCCTACGTCTCAAGACCATAATTCGCATCCTTTGAATCCTCACCATGACATCTCTCCCTTGCACGGCTTTGTTCCGCGCCTTCAGCATAATATTTGGAACCAAATTGATCCTTCCACGGCCGCGCGTGACTCTGCACGTGCTCAGCAGGGCTTGTCTTTGACCCTTTCTTCACAACATCAGCAAGGCTTTGGCTCCAGAGATGTTCAGTCGCAGAACCAACAAGCGGTTTCTGGTGAGGAGAACATGCGAATCTCCGGCGGATCCAGTTCTTCGGCTTCCGGTGTTACCAATGGTGTGGCTGGAATTCAGGGTGTTTTGATTAGCTCCAAATATCTTAAGGCTGCGCAAGAACTTCTAGATGAAGTTGTTAATGTCACCCAAAATGGAATTAAAATTGAATCATCTCCAAAGAAGGCTACTGGGAATCAATCGAAAATGATCGGAGATGCAGCCGCTGCAACCGGAACTGCAGATGGTTCTTTAGAAGGTGAAGCCGACGGTAAACAAGCCGCCGAGCTTACAACATCCGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTTATAAGCATGCTTGAGGAGGTGGAACAAAGATACCGACAGTACCACCACCAGATGCAGATAGTGATATCCACATTCGAGCAGGCCGCTGGAGCCGGTTCGGCGAGAACCTACACTGCGCTTGCACTTCAGACGATTTCAAAGCAATTCCGCTGCTTAAAAGACGCAATTACCGGCCAAATCAGAGCGGCGAACAAGAGTTTGGGTGAAGAAGAATGTATCGGAAGAAAAGTAGAAGGTTCACGGTTGAAATTCGTCGACCACCATCTCCGGCAACAACGAGCTCTTCAACAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAGAGAGGCTTACCCGAGAGATCTGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTCCTCCATCCTTACCCTAAGGATTCCGATAAACACATGCTTGCTAAGCAAACAGGGCTCACAAGAAGTCAGGTTTCCAATTGGTTCATAAACGCGAGAGTTCGACTATGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAAATCAAAGACCAAGAACAGAACGGCAACGGATCGACACCGACAACAGAAAAAAGCAACGACGATTCAGTTTCGAAATCCATAGCTCCACCACCGGAAACAAAGAGCCCCAATTCAAAACAAGAAAACTCTCCAAACCAAAACGTTCATCCTTCAATCTCAATCTCAAATTCCTCCGGCGGAAATGTTCGTAACTCATCTGGATTTACACTCATCGGAACCTCATCGGAACTCGACGGAATCACACAAGGAAGCCCGAAAAAACAGAGAGGCCCAGACATCCTTCATTCCTCAAACAACAACGTGTCTTTCATAAACATGGACATCAAACCTCGAGAAGAAGAAGAACATCAAAATCAAAATCACAATCCCCATCAAAATAACCATCATCATCATCATCTTCTTCCAATGAAATTCGATGAAGATAGACAAAACAGAGATGGGTATTCATTTTTAGGCCAACCCCATTTCAACATCGGCGGATTTGGCCAATACCCAATCGGAGAAATCGCCAGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTATCGTTAACTCTAGGCCTTCCCCATTGCGAAAATCTCTCCTTAAACCCAGCTACCCACCAAAGCTTCCTCCCAAACCAGAGCATCCATTTAGGAAGAAGAACAGAAATTGGAAAGCCCACTGATTTTTCAGCCATTAACGCTTCTACAGCTCATTCTTCCACTGCTTTTGAGACCATCAACATTCAAAATGGAAAAAGGTTTGCTGCTCAATTACTACCAGATTTTGTGGCCTAA 2145 46.06 MATYLHGNSDQFQSSDGGLQTLVLMNPTYVQFSDTTPPPPPPSHPNLLFFNSPSSTANTFTTLTQPPPSSHTQQFVGIPLQTTSAASPTSQDHNSHPLNPHHDISPLHGFVPRLQHNIWNQIDPSTAARDSARAQQGLSLTLSSQHQQGFGSRDVQSQNQQAVSGEENMRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVTQNGIKIESSPKKATGNQSKMIGDAAAATGTADGSLEGEADGKQAAELTTSERQEIQMKKAKLISMLEEVEQRYRQYHHQMQIVISTFEQAAGAGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEECIGRKVEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKDQEQNGNGSTPTTEKSNDDSVSKSIAPPPETKSPNSKQENSPNQNVHPSISISNSSGGNVRNSSGFTLIGTSSELDGITQGSPKKQRGPDILHSSNNNVSFINMDIKPREEEEHQNQNHNPHQNNHHHHHLLPMKFDEDRQNRDGYSFLGQPHFNIGGFGQYPIGEIARFDADQFTPRFSGNNGVSLTLGLPHCENLSLNPATHQSFLPNQSIHLGRRTEIGKPTDFSAINASTAHSSTAFETINIQNGKRFAAQLLPDFVA* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24758171 24760581 - Chy4G085750.1 Chy04g01857 225756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01857 714 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Chy04g01857 714 SUPERFAMILY Homeodomain-like 382 448 IPR009057 -
Chy04g01857 714 Gene3D - 377 455 - -
Chy04g01857 714 Coils Coil 265 292 - -
Chy04g01857 714 MobiDBLite consensus disorder prediction 33 47 - -
Chy04g01857 714 CDD homeodomain 381 442 IPR001356 GO:0003677
Chy04g01857 714 MobiDBLite consensus disorder prediction 125 181 - -
Chy04g01857 714 MobiDBLite consensus disorder prediction 453 550 - -
Chy04g01857 714 MobiDBLite consensus disorder prediction 454 532 - -
Chy04g01857 714 SMART prehox3 187 333 IPR006563 -
Chy04g01857 714 SMART HOX_1 381 445 IPR001356 GO:0003677
Chy04g01857 714 MobiDBLite consensus disorder prediction 48 95 - -
Chy04g01857 714 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 667 - -
Chy04g01857 714 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Chy04g01857 714 Pfam Associated with HOX 192 332 IPR006563 -
Chy04g01857 714 MobiDBLite consensus disorder prediction 239 264 - -
Chy04g01857 714 MobiDBLite consensus disorder prediction 31 107 - -
Chy04g01857 714 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 10 667 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01857 Chy-Chr4:24758171 Chy04g02186 Chy-Chr4:26875456 1.81E-61 dispersed
Chy01g02003 Chy-Chr1:24997152 Chy04g01857 Chy-Chr4:24758171 1.33E-85 transposed
Chy03g01640 Chy-Chr3:18276116 Chy04g01857 Chy-Chr4:24758171 1.28E-49 transposed
Chy09g01251 Chy-Chr9:14557463 Chy04g01857 Chy-Chr4:24758171 1.33E-84 transposed
Chy11g00350 Chy-Chr11:3195879 Chy04g01857 Chy-Chr4:24758171 7.35E-105 transposed
Chy12g00801 Chy-Chr12:12810356 Chy04g01857 Chy-Chr4:24758171 8.10E-72 transposed
Chy04g01857 Chy-Chr4:24758171 Chy05g00203 Chy-Chr5:1699963 4.44E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17918 PF07526 POX 1.80E-48 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01857 - - csv:101208201 1313.9