Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01900 ATGTCCATAAACAACTTCTCTCCTGACTTCCATCAACCACCTCTTTTCTCTACTTCCCAACTTCCCATCATGCTCAACTCCAAATCCTCTCTCTCCGTCGCCCCCGCCGACCACCTTCCCATGTTCGAGAAACCCTTGACCCCCAGCGACGTTGGCAAACTCAACCGTCTCGTCATCCCCAAGCAATACGCAGAAAAATACTTTCCCCTCTCTCCTTCCTCCGCAGTCGCCACCGCCGCCGCTGCCGTCGGTGACTCTGCGGATAAGGGGTTGCTCCTCAGCTTTGAAGATGAGTCCGGGAAAATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTGACCAAAGGGTGGAGCCGGTTTGTTAAAGAGAAGCGGCTTGATGCTGGCGATGTCGTCGTTTTTGAACGCCACCGCCGCGACGGTGATAGGTTGTTCATTGGGTGGAAAAAGAGGTCGGCACCGTCTCCAACGGACAGTGCGGTGGCGACGGGGAGTGGTGGGGTTGGCGGCGGTGGAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGATTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCGTTGCTCAATGTCGGGTCAAGTTTAACTTTATCGGGTCGAGATCCAACCCGCCACACCTTCTACCCACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAACCAGACGAAATATCAAGGATAG 786 52.8 MSINNFSPDFHQPPLFSTSQLPIMLNSKSSLSVAPADHLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSSAVATAAAAVGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKKRSAPSPTDSAVATGSGGVGGGGESSVQSQTVSIGNSKILRLFGVDLECQTDMSEPEPPSLLNVGSSLTLSGRDPTRHTFYPHYSSPLPHHMDFTFSQDVNQTKYQG* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25061405 25064053 + Chy4G086180.1 Chy04g01900 225799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01900 261 Pfam B3 DNA binding domain 42 156 IPR003340 GO:0003677
Chy04g01900 261 Gene3D - 35 166 IPR015300 -
Chy04g01900 261 SMART B3_2 42 157 IPR003340 GO:0003677
Chy04g01900 261 CDD B3_DNA 40 146 IPR003340 GO:0003677
Chy04g01900 261 SUPERFAMILY DNA-binding pseudobarrel domain 38 156 IPR015300 -
Chy04g01900 261 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 211 IPR044800 GO:0003700
Chy04g01900 261 ProSiteProfiles B3 DNA-binding domain profile. 42 157 IPR003340 GO:0003677
Chy04g01900 261 MobiDBLite consensus disorder prediction 157 184 - -
Chy04g01900 261 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 36 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01900 Chy-Chr4:25061405 Chy11g01776 Chy-Chr11:24118846 1.82E-48 dispersed
Chy04g01900 Chy-Chr4:25061405 Chy07g01218 Chy-Chr7:16986631 7.05E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17921 PF02362 B3 6.10E-30 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01900 - - csv:101214938 464.536