Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy04g01900 | ATGTCCATAAACAACTTCTCTCCTGACTTCCATCAACCACCTCTTTTCTCTACTTCCCAACTTCCCATCATGCTCAACTCCAAATCCTCTCTCTCCGTCGCCCCCGCCGACCACCTTCCCATGTTCGAGAAACCCTTGACCCCCAGCGACGTTGGCAAACTCAACCGTCTCGTCATCCCCAAGCAATACGCAGAAAAATACTTTCCCCTCTCTCCTTCCTCCGCAGTCGCCACCGCCGCCGCTGCCGTCGGTGACTCTGCGGATAAGGGGTTGCTCCTCAGCTTTGAAGATGAGTCCGGGAAAATATGGCGGTTCCGTTACTCTTATTGGAATAGTAGTCAGAGCTATGTGCTGACCAAAGGGTGGAGCCGGTTTGTTAAAGAGAAGCGGCTTGATGCTGGCGATGTCGTCGTTTTTGAACGCCACCGCCGCGACGGTGATAGGTTGTTCATTGGGTGGAAAAAGAGGTCGGCACCGTCTCCAACGGACAGTGCGGTGGCGACGGGGAGTGGTGGGGTTGGCGGCGGTGGAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGATTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCGTTGCTCAATGTCGGGTCAAGTTTAACTTTATCGGGTCGAGATCCAACCCGCCACACCTTCTACCCACATTATTCTTCTCCTCTTCCTCATCACATGGATTTCACTTTCTCACAAGATGTCAACCAGACGAAATATCAAGGATAG | 786 | 52.8 | MSINNFSPDFHQPPLFSTSQLPIMLNSKSSLSVAPADHLPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPSSAVATAAAAVGDSADKGLLLSFEDESGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKKRSAPSPTDSAVATGSGGVGGGGESSVQSQTVSIGNSKILRLFGVDLECQTDMSEPEPPSLLNVGSSLTLSGRDPTRHTFYPHYSSPLPHHMDFTFSQDVNQTKYQG* | 262 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 25061405 | 25064053 | + | Chy4G086180.1 | Chy04g01900 | 225799 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy04g01900 | 261 | Pfam | B3 DNA binding domain | 42 | 156 | IPR003340 | GO:0003677 | |
Chy04g01900 | 261 | Gene3D | - | 35 | 166 | IPR015300 | - | |
Chy04g01900 | 261 | SMART | B3_2 | 42 | 157 | IPR003340 | GO:0003677 | |
Chy04g01900 | 261 | CDD | B3_DNA | 40 | 146 | IPR003340 | GO:0003677 | |
Chy04g01900 | 261 | SUPERFAMILY | DNA-binding pseudobarrel domain | 38 | 156 | IPR015300 | - | |
Chy04g01900 | 261 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 36 | 211 | IPR044800 | GO:0003700 | |
Chy04g01900 | 261 | ProSiteProfiles | B3 DNA-binding domain profile. | 42 | 157 | IPR003340 | GO:0003677 | |
Chy04g01900 | 261 | MobiDBLite | consensus disorder prediction | 157 | 184 | - | - | |
Chy04g01900 | 261 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 | 36 | 211 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g01900 | Chy-Chr4:25061405 | Chy11g01776 | Chy-Chr11:24118846 | 1.82E-48 | dispersed | |
Chy04g01900 | Chy-Chr4:25061405 | Chy07g01218 | Chy-Chr7:16986631 | 7.05E-48 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17921 | PF02362 | B3 | 6.10E-30 | CL0405 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy04g01900 | - | - | csv:101214938 | 464.536 |