Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01945 ATGAATCACAAAATGCTCAAATTACCTTTAATTCTCACTTCCATTTTCCTCTTTGTCGCCGCCGTCTCTTCATCCAATAATGCTGACAGACAGGTAAAAACAAACCCCACCGCCGCACTTCATGGTGGTTTCCGCCATCCTCCGGCATATGTTGTGTACATGGGAGCATTGCCAAAATTAGAGAGTCATGAAGTTTTGGCAGATCATCATCATAGCCTTCTTGCTAATGCTGTTGGAGATGAGGAAATGGCAAGAAAAGCCAAGATTCATAGCTATGGAAGGAGCTTTAATGGATTTGCTGCAAGACTCTCGCCCCATGAAGCCAACAAGTTAGAAAAGGAAAAAAAAGTGGTGTCAGTATTTCGGAGCAAGACGAGAAAATTGCATACAACGAGATCATGGGATTTTTTGGGGCTCTCGGAGGCGGTGAGCCGGCGGAACGCTGCCGCAGAATCCAACGTAATCGTGGGACTATTGGATTCGGGGATATGGATGGAAGGTCCAAGTTTTAAAGACGATGGTTATGGTGAAATTCCTTCTAAGTGGAAAGGCAAATGTGTTACTGGTCGTAATTTCACTTCCTGTAACAGGAAAGTGATCGGCGCGAGGTTCTTCGACATTGAACAAATAGATAATTCCATCGATAAAAGCCCCGCCGACGAGATCGGTCACGGCTCCCACACCGCCTCAACAATCGCCGGAGCCTCCGTTGACGGCGCCAGTTTCTACGGCGTCGCCGGAGGAACGGCTCGCGGCGGCGTTCCGGGGGCGAGAATCGCGATGTACAAAGTGTGCTGGGTTGATGGGTGCAGTGACGTGGACTTGCTGGCCGGATTCGACCATGCAATCGCCGACGGAGTGGACATCATATCGGTGTCCATCGGCGGCGAGTCGACGGAATTCTTCAATGATCCGATCGCGATCGGATCCTTTCACGCAATGGAGAAAGGAATATTGACTAGTTGCTCGGCGGGAAACAGCGGGCCGGAATTAAAGACGGTGGAGAACACGGCGCCGTGGATAATGACGGTGGCGGCTTCTACAATTGATAGGGATTTCAGTACCGTCGTGAAGTTGGGTAACAATAAGAAGCTCTCTGGAGTATCAGTAAACACATTCACTCCAAAGAAGCAAATGCACCCTTTAATCTCCGGATCAAATGCTGCATTACCCAATCAATCCGATCCCTATCTTGATCCAAGTTGGTGTGATTCTGGGACTCTTGATGAGAAAAAAGTGAAAGGAAAAATAGTGTATTGTTTGGGATCAATGGACCAAGAATACACCATTTCTGAACTTGGAGGCAAAGGTGTAATTTCCAATCTTATGAACGTTACTGAAATGGCCATTACCACTCCTATTCCATCCACTCATCTTTCCTCTACCAATTCTGGTTATGTTGAAGCCTACATTAACTCCACCAAAAACCCTAAAGCTGTCATTTACAAAACTACTACAAGGAAGGTTGATGCTCCCTATTTGGCTTCCTTTTCTTCTAAAGGTCCTCAAACCATCGCTCTCAATATTCTTAAGCCGGACATTGCAGCACCGGGGGTGAACATATTAGCAGCATACTCAAATTTGGCTTCAATTACAAACAATAGACATTCCCTTTTCAATCTTCTTTCTGGTACTTCTATGGCTTGTCCTCATGCTGCCGCTGCGGCCGCCTATCTCAAAGCTTTTCACCCCACTTGGTCCCCCGCTGCCCTCAAGTCTGCACTTATGACCACCGCGACGCCATTGAAGATTGGAGATAAACTAGACGTGATTGGCGCCGGCACTGGCCAAATAAATCCGATCAAAGCGGTGCATCCAGGCCTCATTTACGACCTCTCTCGCACCTCTTACCTCTCTTTCCTCTGCACCCACAAACGCTACTCCGACTCCGACTCCGCCCTCGCCATCCTTACCGGAGACACCTCTTTAAACTGCTCCGACGTCCCGCAAGCCAGTGGCTTCGACGCCATCAACTACCCTTCCATGTACGTCCCCGTCGACCGAAACGCCACCTCTGTCTCCGCCGTCTTCCACCGGACCGTCACCCACGTTGGCTTCGGCCCATCGACGTACATAGCGAAGGTGAAATCGCCGGCAGGTTTGTCGGTGAAAGTCTCGCCGAAGACTCTGAAATTTGATCGGGCGTACAAAAAACTGTCGTTTAAGGTGGTGGTGAAAGGGGCAGCGCCGGCGGTGGGGCAGGCACCGTTGACGGCTTCACTTGAATGGGATGATTCTAAGCATTATGTTAGGAGCCCAATTTTGGTCTTTAAGGTTTAA 2280 49.08 MNHKMLKLPLILTSIFLFVAAVSSSNNADRQVKTNPTAALHGGFRHPPAYVVYMGALPKLESHEVLADHHHSLLANAVGDEEMARKAKIHSYGRSFNGFAARLSPHEANKLEKEKKVVSVFRSKTRKLHTTRSWDFLGLSEAVSRRNAAAESNVIVGLLDSGIWMEGPSFKDDGYGEIPSKWKGKCVTGRNFTSCNRKVIGARFFDIEQIDNSIDKSPADEIGHGSHTASTIAGASVDGASFYGVAGGTARGGVPGARIAMYKVCWVDGCSDVDLLAGFDHAIADGVDIISVSIGGESTEFFNDPIAIGSFHAMEKGILTSCSAGNSGPELKTVENTAPWIMTVAASTIDRDFSTVVKLGNNKKLSGVSVNTFTPKKQMHPLISGSNAALPNQSDPYLDPSWCDSGTLDEKKVKGKIVYCLGSMDQEYTISELGGKGVISNLMNVTEMAITTPIPSTHLSSTNSGYVEAYINSTKNPKAVIYKTTTRKVDAPYLASFSSKGPQTIALNILKPDIAAPGVNILAAYSNLASITNNRHSLFNLLSGTSMACPHAAAAAAYLKAFHPTWSPAALKSALMTTATPLKIGDKLDVIGAGTGQINPIKAVHPGLIYDLSRTSYLSFLCTHKRYSDSDSALAILTGDTSLNCSDVPQASGFDAINYPSMYVPVDRNATSVSAVFHRTVTHVGFGPSTYIAKVKSPAGLSVKVSPKTLKFDRAYKKLSFKVVVKGAAPAVGQAPLTASLEWDDSKHYVRSPILVFKV* 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25351439 25354861 + Chy4G086630.1 Chy04g01945 225844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01945 759 CDD PA_subtilisin_like 356 481 - -
Chy04g01945 759 Gene3D - 350 487 - -
Chy04g01945 759 Pfam Subtilase family 152 583 IPR000209 GO:0006508|GO:0008236
Chy04g01945 759 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 44 129 IPR037045 -
Chy04g01945 759 Gene3D Peptidase S8/S53 domain 153 617 IPR036852 GO:0004252|GO:0006508
Chy04g01945 759 Pfam Fibronectin type-III domain 657 756 IPR041469 -
Chy04g01945 759 SUPERFAMILY Subtilisin-like 128 608 IPR036852 GO:0004252|GO:0006508
Chy04g01945 759 Pfam Peptidase inhibitor I9 50 129 IPR010259 -
Chy04g01945 759 ProSitePatterns Serine proteases, subtilase family, serine active site. 544 554 IPR023828 -
Chy04g01945 759 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 37 759 IPR045051 -
Chy04g01945 759 PANTHER CUCUMISIN PROTEIN 37 759 - -
Chy04g01945 759 Gene3D - 621 758 - -
Chy04g01945 759 CDD Peptidases_S8_3 127 580 IPR034197 -
Chy04g01945 759 ProSiteProfiles Serine proteases, subtilase domain profile. 133 604 - -
Chy04g01945 759 PRINTS Subtilisin serine protease family (S8) signature 151 170 IPR015500 -
Chy04g01945 759 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Chy04g01945 759 PRINTS Subtilisin serine protease family (S8) signature 543 559 IPR015500 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01945 - - - csv:101210386 1249.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01945 Chy-Chr4:25351439 Chy10g00497 Chy-Chr10:11342656 0 dispersed
Chy07g01221 Chy-Chr7:17004907 Chy04g01945 Chy-Chr4:25351439 8.08E-87 transposed
Chy09g01382 Chy-Chr9:15573106 Chy04g01945 Chy-Chr4:25351439 0 transposed
Chy10g01235 Chy-Chr10:16978314 Chy04g01945 Chy-Chr4:25351439 0 transposed
Chy04g01945 Chy-Chr4:25351439 Chy08g00925 Chy-Chr8:16668331 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01124 . 10 767 Subtilisin-like Serine Gene Family AT1G04110 67.4 1.4e-310 1062.0
Chy04g00401 . 30 767 Subtilisin-like Serine Gene Family AT1G20150 53.3 2.4e-225 778.9
Chy04g00401 . 6 511 Subtilisin-like Serine Gene Family AT1G20160 61.7 5.4e-171 597.8
Chy03g00859 . 38 489 Subtilisin-like Serine Gene Family AT1G20160 51.4 1.8e-118 423.3
Chy02g00053 . 9 836 Subtilisin-like Serine Gene Family AT1G30600 64.7 1.6e-312 1068.5
Chy07g01221 . 58 376 Subtilisin-like Serine Gene Family AT1G32940 58.5 6.4e-103 372.1
Chy07g01221 . 58 376 Subtilisin-like Serine Gene Family AT1G32950 56.2 1.7e-100 364.0
Chy07g01221 . 34 375 Subtilisin-like Serine Gene Family AT1G32960 57.2 9.5e-113 404.8
Chy07g01220 . 3 334 Subtilisin-like Serine Gene Family AT1G32960 50.6 4.9e-85 312.8
Chy07g01220 . 3 334 Subtilisin-like Serine Gene Family AT1G32970 53.3 2.5e-94 343.6
Chy12g00529 . 263 1000 Subtilisin-like Serine Gene Family AT1G62340 52.4 1.6e-222 769.6
Chy07g01221 . 34 376 Subtilisin-like Serine Gene Family AT1G66220 54.6 7.9e-96 348.6
Chy01g00548 . 2 735 Subtilisin-like Serine Gene Family AT2G04160 64.1 1.9e-278 955.3
Chy06g01925 . 114 853 Subtilisin-like Serine Gene Family AT2G04160 59.1 1.0e-255 879.8
Chy06g01923 . 1465 2207 Subtilisin-like Serine Gene Family AT2G04160 58.3 3.0e-252 868.2
Chy12g00647 . 30 731 Subtilisin-like Serine Gene Family AT2G04160 53.9 2.1e-213 739.2
Chy12g00648 . 3 652 Subtilisin-like Serine Gene Family AT2G04160 52.1 5.6e-190 661.4
Chy06g01918 . 45 627 Subtilisin-like Serine Gene Family AT2G04160 53.6 7.1e-177 617.8
Chy02g01279 . 24 765 Subtilisin-like Serine Gene Family AT2G05920 73.1 0.0e+00 1095.9
Chy02g00861 . 24 760 Subtilisin-like Serine Gene Family AT2G05920 55.0 1.4e-230 796.2
Chy03g01581 . 36 771 Subtilisin-like Serine Gene Family AT2G05920 55.5 6.0e-221 764.2
Chy01g02163 . 33 764 Subtilisin-like Serine Gene Family AT2G05920 53.5 3.2e-214 741.9
Chy06g00888 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 51.5 1.2e-213 740.0
Chy01g02134 . 26 768 Subtilisin-like Serine Gene Family AT2G05920 51.6 2.8e-202 702.2
Chy11g00264 . 15 688 Subtilisin-like Serine Gene Family AT2G05920 51.3 5.0e-191 664.8
Chy05g00874 CCT 21 817 Subtilisin-like Serine Gene Family AT2G19170 82.8 0.0e+00 1354.0
Chy01g02163 . 9 767 Subtilisin-like Serine Gene Family AT3G14067 64.1 1.0e-284 976.1
Chy02g00861 . 9 760 Subtilisin-like Serine Gene Family AT3G14067 54.1 1.9e-225 779.2
Chy02g01279 . 23 761 Subtilisin-like Serine Gene Family AT3G14067 53.5 9.9e-219 756.9
Chy03g01581 . 22 771 Subtilisin-like Serine Gene Family AT3G14067 50.7 5.4e-209 724.5
Chy01g02134 . 8 774 Subtilisin-like Serine Gene Family AT3G14067 50.2 2.6e-203 705.7
Chy11g00264 . 6 690 Subtilisin-like Serine Gene Family AT3G14067 50.7 1.8e-183 639.8
Chy01g02134 . 29 776 Subtilisin-like Serine Gene Family AT3G14240 77.2 0.0e+00 1200.7
Chy11g00264 . 13 697 Subtilisin-like Serine Gene Family AT3G14240 58.7 7.8e-224 773.9
Chy02g00861 . 26 756 Subtilisin-like Serine Gene Family AT3G14240 52.9 9.9e-219 756.9
Chy06g00888 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.1 2.6e-211 732.3
Chy02g01279 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 51.4 2.4e-209 725.7
Chy01g02163 . 32 765 Subtilisin-like Serine Gene Family AT3G14240 51.0 3.5e-208 721.8
Chy03g01581 . 38 770 Subtilisin-like Serine Gene Family AT3G14240 50.3 3.8e-202 701.8
Chy10g00140 . 9 567 Subtilisin-like Serine Gene Family AT4G00230 59.9 9.3e-193 670.2
Chy10g01235 . 13 507 Subtilisin-like Serine Gene Family AT4G00230 50.9 1.7e-133 473.4
Chy07g01221 . 58 376 Subtilisin-like Serine Gene Family AT4G10510 56.5 1.0e-100 364.8
Chy07g01220 . 3 334 Subtilisin-like Serine Gene Family AT4G10510 52.1 1.1e-91 334.7
Chy07g01221 . 34 376 Subtilisin-like Serine Gene Family AT4G10520 57.5 1.5e-110 397.5
Chy07g01221 . 34 381 Subtilisin-like Serine Gene Family AT4G10530 55.8 4.0e-108 389.4
Chy07g01221 . 21 376 Subtilisin-like Serine Gene Family AT4G10540 56.6 1.8e-111 400.6
Chy07g01220 . 3 334 Subtilisin-like Serine Gene Family AT4G10540 50.3 9.6e-89 325.1
Chy07g01221 . 58 376 Subtilisin-like Serine Gene Family AT4G10550 56.9 2.4e-102 370.2
Chy02g00053 . 12 836 Subtilisin-like Serine Gene Family AT4G20430 67.6 0.0e+00 1128.2
Chy12g01013 . 1 272 Subtilisin-like Serine Gene Family AT4G21320 78.0 1.1e-125 446.4
Chy07g01221 . 28 376 Subtilisin-like Serine Gene Family AT4G21630 51.2 3.2e-97 353.2
Chy07g01220 . 8 334 Subtilisin-like Serine Gene Family AT4G21630 51.2 1.2e-83 308.1
Chy07g01221 . 28 378 Subtilisin-like Serine Gene Family AT4G21640 51.9 4.8e-98 355.9
Chy07g01221 . 26 376 Subtilisin-like Serine Gene Family AT4G21650 52.0 9.1e-100 361.7
Chy07g01220 . 8 334 Subtilisin-like Serine Gene Family AT4G21650 50.6 2.2e-85 313.9
Chy12g00718 . 47 773 Subtilisin-like Serine Gene Family AT4G26330 55.9 1.7e-233 805.8
Chy05g00874 CCT 9 817 Subtilisin-like Serine Gene Family AT4G30020 82.1 0.0e+00 1346.6
Chy11g00264 . 5 697 Subtilisin-like Serine Gene Family AT4G34980 75.5 6.8e-314 1073.2
Chy01g02134 . 16 776 Subtilisin-like Serine Gene Family AT4G34980 54.2 8.5e-231 797.0
Chy02g00861 . 1 756 Subtilisin-like Serine Gene Family AT4G34980 51.1 6.3e-210 727.6
Chy06g00888 . 1 771 Subtilisin-like Serine Gene Family AT4G34980 50.2 1.6e-208 723.0
Chy02g01279 . 13 757 Subtilisin-like Serine Gene Family AT4G34980 50.4 5.5e-206 714.5
Chy04g01945 . 50 578 Subtilisin-like Serine Gene Family AT5G03620 58.7 4.8e-178 621.3
Chy08g00925 . 14 528 Subtilisin-like Serine Gene Family AT5G03620 59.0 3.0e-172 602.1
Chy10g00140 . 8 565 Subtilisin-like Serine Gene Family AT5G03620 50.6 5.0e-143 505.0
Chy10g01235 . 13 506 Subtilisin-like Serine Gene Family AT5G03620 51.7 5.0e-135 478.4
Chy10g00496 . 4 467 Subtilisin-like Serine Gene Family AT5G03620 52.6 3.0e-127 452.6
Chy07g01221 . 31 375 Subtilisin-like Serine Gene Family AT5G11940 51.6 2.2e-98 357.1
Chy02g01868 . 227 986 Subtilisin-like Serine Gene Family AT5G19660 79.7 0.0e+00 1273.1
Chy02g00053 . 34 610 Subtilisin-like Serine Gene Family AT5G44530 69.9 5.1e-242 833.9
Chy02g00195 . 1 628 Subtilisin-like Serine Gene Family AT5G45640 51.4 4.7e-173 605.1
Chy02g00195 . 1 645 Subtilisin-like Serine Gene Family AT5G45650 55.3 1.6e-200 696.4
Chy06g00888 . 12 770 Subtilisin-like Serine Gene Family AT5G51750 72.4 0.0e+00 1148.3
Chy02g00861 . 21 760 Subtilisin-like Serine Gene Family AT5G51750 53.4 2.7e-232 802.0
Chy03g01581 . 24 771 Subtilisin-like Serine Gene Family AT5G51750 52.0 5.1e-223 771.2
Chy02g01279 . 22 761 Subtilisin-like Serine Gene Family AT5G51750 51.8 8.1e-221 763.8
Chy11g00264 . 16 697 Subtilisin-like Serine Gene Family AT5G51750 51.3 3.0e-191 665.6
Chy10g01235 . 12 679 Subtilisin-like Serine Gene Family AT5G58830 50.1 3.3e-168 589.0
Chy09g01382 . 352 1052 Subtilisin-like Serine Gene Family AT5G59190 50.4 4.4e-186 648.3
Chy10g00496 . 1 644 Subtilisin-like Serine Gene Family AT5G59190 50.2 3.5e-175 612.1
Chy06g01923 . 1465 2210 Subtilisin-like Serine Gene Family AT5G59810 60.4 1.3e-258 889.4
Chy01g00548 . 1 735 Subtilisin-like Serine Gene Family AT5G59810 59.3 1.6e-256 882.5
Chy12g00647 . 29 734 Subtilisin-like Serine Gene Family AT5G59810 60.5 6.8e-244 840.5
Chy06g01925 . 114 853 Subtilisin-like Serine Gene Family AT5G59810 55.1 7.8e-232 800.4
Chy12g00648 . 1 653 Subtilisin-like Serine Gene Family AT5G59810 57.9 1.3e-213 740.0
Chy06g01918 . 52 630 Subtilisin-like Serine Gene Family AT5G59810 55.3 1.7e-178 623.2
Chy02g00861 . 9 762 Subtilisin-like Serine Gene Family AT5G67360 72.4 0.0e+00 1107.0
Chy03g01581 . 10 773 Subtilisin-like Serine Gene Family AT5G67360 64.5 3.6e-290 994.2
Chy02g01279 . 27 762 Subtilisin-like Serine Gene Family AT5G67360 56.1 5.8e-232 800.8
Chy06g00888 . 28 769 Subtilisin-like Serine Gene Family AT5G67360 54.0 9.0e-225 776.9
Chy01g02163 . 1 764 Subtilisin-like Serine Gene Family AT5G67360 53.9 3.0e-220 761.9
Chy01g02134 . 7 771 Subtilisin-like Serine Gene Family AT5G67360 51.8 3.3e-211 731.9
Chy11g00264 . 5 691 Subtilisin-like Serine Gene Family AT5G67360 52.5 5.1e-196 681.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003215 0 2 2 1 2 1 2 1 1 2 3 1 2 2 2 2 2 1 3 1 2 2 2 1 1 2 2 2 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g01945 Chy_Chr04 FPKM 0.0 0.0 0.0 0.350217 0.0 0.328857 0.0 0.0 0.0 0.0