Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01955 ATGTTGGGTTATTTCAGTGCAGCTCAAAGGCAAGAACTTGAACTTCAAGCTCTCATTTTCCGGTATATGATAGCCGGCGCCGCCGTCCCGCCGGAGCTTCTTCATCTTATTAAGAAAAGCCTTCTTTCTTCCACTCCTACTCCTTTATTTCTTCATCATCCTCTTCAACATTTCCCTCATTATCCCACTTCTTTGTTACAAGCAGGGTATTGGGGCAGAGCCGCCATGGATCCGGAGCCTGGCCGGTGCCGTAGAACCGACGGCAAAAAATGGCGTTGCTCTAGAGATGTGGTCGCCGGCCAGAAATATTGTGAACGTCACATGCACCGTGGCCGTAACCGTTCAAGAAAGCCTGTGGAAACCGCCACAACTAACGCCGCCACCACTGCAGGCGGAGTGGGCGGCGGTTGTTCTATCAGTTCCAACTCCAACCGTGGCGGTGGCGGTGGTGGTGGTCGGCCTTTTTTGACTGTGGAAAGTGGAAATTATTTCTCCATGTGTGAACAAACCCCATCCGTTGATCTTCTCCATCTCAATCAAGGTTCTTGCTCTAATTCTTTATCAGAGAACAAGAATTTCTATCAGTCCCACAAAGAGCCTTCCACCGGAGATGTTAAACCCGACGGCCACATTTTGAGGCATTTTTTCGACGATTGGCCACGGTCAGAAAATGATGGATGTGGGAACGACAATAACAACAATGTCAACCAACGAATGAACTCCACATCTGCTTCTGCAACATCCCTTTCGATTTCGATGCCGTCCTTGACCTCTGACGTGTCATTGAAATTGTCGACAGGAGGAAGTTCTGATCGAGGCAGTGATCACCACAACCACCAAAATGGCAACGTTGACCGAGAACAACACACGCACTTGAATTGGGCTGCGGGATGGGCTGCCACGCAGATGGCGTCGATGGGTGGACCGTTGGCAGAGGCGCTACGCTCCGCGAATAACAGCTCGTTGCCAACGAGTGTGCTGCATCAGTTACAAAGAACAACCAACTCGGAAGCTAGCTTTATTAGCACGTGA 1032 50.19 MLGYFSAAQRQELELQALIFRYMIAGAAVPPELLHLIKKSLLSSTPTPLFLHHPLQHFPHYPTSLLQAGYWGRAAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVETATTNAATTAGGVGGGCSISSNSNRGGGGGGGRPFLTVESGNYFSMCEQTPSVDLLHLNQGSCSNSLSENKNFYQSHKEPSTGDVKPDGHILRHFFDDWPRSENDGCGNDNNNNVNQRMNSTSASATSLSISMPSLTSDVSLKLSTGGSSDRGSDHHNHQNGNVDREQHTHLNWAAGWAATQMASMGGPLAEALRSANNSSLPTSVLHQLQRTTNSEASFIST* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25460305 25461791 - Chy4G086730.1 Chy04g01955 225854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01955 343 MobiDBLite consensus disorder prediction 126 153 - -
Chy04g01955 343 Coils Coil 341 343 - -
Chy04g01955 343 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Chy04g01955 343 MobiDBLite consensus disorder prediction 270 284 - -
Chy04g01955 343 Pfam QLQ 5 37 IPR014978 GO:0005524|GO:0005634|GO:0006355
Chy04g01955 343 Pfam WRC 78 120 IPR014977 -
Chy04g01955 343 ProSiteProfiles QLQ domain profile. 4 39 IPR014978 GO:0005524|GO:0005634|GO:0006355
Chy04g01955 343 MobiDBLite consensus disorder prediction 222 284 - -
Chy04g01955 343 PANTHER - 3 343 IPR031137 GO:0005634|GO:0006351|GO:0032502
Chy04g01955 343 PANTHER GROWTH-REGULATING FACTOR 3 3 343 - -
Chy04g01955 343 MobiDBLite consensus disorder prediction 225 269 - -
Chy04g01955 343 MobiDBLite consensus disorder prediction 126 147 - -
Chy04g01955 343 SMART QLQ_2 3 39 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01955 Chy-Chr4:25460305 Chy11g00519 Chy-Chr11:5699392 1.42E-40 dispersed
Chy04g01955 Chy-Chr4:25460305 Chy02g01265 Chy-Chr2:9244498 9.84E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17925 PF08879 WRC 2.00E-22 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01955 - - csv:101203628 589.726