Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01959 ATGGCTTCTTCTTCTGGCCGCCACCCCGTCTACCGAGGCGTGCGCCGTCGCAACACCGGCAAATGGGTCTCGGAAATCCGCGAGCCAAGGAAGCCCAACCGTATTTGGCTCGGAACTTTTCCCACCGCTGAAATGGCTGCCGTTGCTTACGACGTTGCAGCCCTTGCCCTAAAAGGCCAAGACGCCGAACTTAATTTCCCTAATTCCGCCTCGTCTCTCCCCATCCCCGCTTCTAGTTCTCGTCGTGGAAGTCATTCCGAAGACGTCATGTATGGAGCGAGATATGGTCAAGAATATGAATTGGGAAATCAGTTCATGGACGAGGACTTGATCTTTGATATGCCTAATGTTCTAATGAATATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCATGGCGGAGACGACGACCGCGACTTCGGCACTGACCAAAATCTTTGGAATTTTCCCTAA 462 51.95 MASSSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSASSLPIPASSSRRGSHSEDVMYGARYGQEYELGNQFMDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDRDFGTDQNLWNFP* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25507903 25508454 - Chy4G086770.1 Chy04g01959 225858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01959 153 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Chy04g01959 153 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Chy04g01959 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 99 153 - -
Chy04g01959 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 3 82 - -
Chy04g01959 153 MobiDBLite consensus disorder prediction 132 153 - -
Chy04g01959 153 Pfam AP2 domain 9 59 IPR001471 GO:0003700|GO:0006355
Chy04g01959 153 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Chy04g01959 153 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677
Chy04g01959 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 82 - -
Chy04g01959 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 99 153 - -
Chy04g01959 153 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700|GO:0006355
Chy04g01959 153 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Chy04g01959 153 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01959 Chy-Chr4:25507903 Chy08g00915 Chy-Chr8:16587585 5.34E-54 dispersed
Chy04g01958 Chy-Chr4:25493658 Chy04g01959 Chy-Chr4:25507903 7.17E-33 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17927 PF00847 AP2 6.30E-13 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01959 - - csv:101203380 288.115