Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01960 ATGGATGATCAATATCCCCTCTCCGATCTCCGCCACCTCTTGAGTACGCCTCCATCTCGTTCCCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCGCCGCCTTTCGCCACCACCATACTCCCTACGACCTCATCATGATGATGCCACGCGACACTCCCCTCCCCGACTTTCGCTCCGATTCCACCACCACACCATCTGCTCCCATACTCTCAGCTCACCCTGTTCACAACGCTTTCGAGCCAGAAACCGCGTCCATCGCTGCCGACTGCGCTACAGCTCGATGGCCTCGACAAGAAACCCTTACTCTCTTGGAAATTAGATCTCGACTTGATTCTAAGTTCAAAGAAGCTAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATTATGGCTGACGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAATTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAATTACAGATTCTTTAGGCAATTGGAAGCTCTCTATGGTGAAACAAGCAATTCTCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACAAACCTCAGATTCCAACAAAATGGAACTAACAATCCAACCGCCTCCGCTCCGATGAGCCACGAAGCTCACCAGAAGCATTACTGCGACAGCCTTAGCCTCTCCAACACCTCCGAGTTTGAAACCTCGGCTTCATCAGATGGAAATGACGACCTCGGTTCGGTTGGTGTAATGGATAACGATTCAATGGAGAAAAGAAGGAAAAAGCGGGGCGGAAAATGCTGGAAGGCTAAAATTAAACAGTTCATCGACTCGCAAATGAGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATTCGGGACGAGGAATGGAGAAGACAAGAAGTGTCCAGAATGGATAGGGAGAGAAGCTTTTGGGCCAAGGAGAGAGCATGGATAGAATCTAGAGATGCGGCATTAATGGATGCATTACAAAGGCTAACAGGAAGAGAATTGAGAGATAATAATCAATACAACTCCTCGCCTGACCACGGATTAATTGTAGCCGAGCATCATCGAAACAATAACGAGAATCAAAACGAAGACGGGAGCGAAATACTAAACAACAACACAGCTAGAGAGTTATTAGCAGACAACAACGATAATTACCAAAGGAAAATAATTGATAATCATGGCAACAAGAAACGCAAGGAGAATACAACATCAACAACAACCACCACCTACAATCTTTACTTCCAACAACACACCGATTCCTCCCTCTATACCCGTGGCGGTGGCGGACAGTACGACGGTGCCACCCACATCAAAGAACAAAGTCCAAATAGTTCGAACGCAGGTGGCAGCGGTGGCGGTCATGTGGTGCAAGATAACTGCTTCAGGTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTGTGGGAAAATTTTGGTCTCAAACTCAACAATGGAAGTGACCAAACTTGA 1557 45.28 MDDQYPLSDLRHLLSTPPSRSHFPSSSSIPHHDLSSAAFRHHHTPYDLIMMMPRDTPLPDFRSDSTTTPSAPILSAHPVHNAFEPETASIAADCATARWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMADEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTNNPTASAPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDLGSVGVMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIRDEEWRRQEVSRMDRERSFWAKERAWIESRDAALMDALQRLTGRELRDNNQYNSSPDHGLIVAEHHRNNNENQNEDGSEILNNNTARELLADNNDNYQRKIIDNHGNKKRKENTTSTTTTTYNLYFQQHTDSSLYTRGGGGQYDGATHIKEQSPNSSNAGGSGGGHVVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25522104 25524961 + Chy4G086780.1 Chy04g01960 225859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01960 518 MobiDBLite consensus disorder prediction 14 29 - -
Chy04g01960 518 CDD GT1 98 163 - -
Chy04g01960 518 MobiDBLite consensus disorder prediction 241 272 - -
Chy04g01960 518 PANTHER - 16 404 - -
Chy04g01960 518 PANTHER - 419 505 - -
Chy04g01960 518 ProSiteProfiles Myb-like domain profile. 98 156 IPR001005 -
Chy04g01960 518 MobiDBLite consensus disorder prediction 464 480 - -
Chy04g01960 518 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 16 404 - -
Chy04g01960 518 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 419 505 - -
Chy04g01960 518 Coils Coil 293 320 - -
Chy04g01960 518 MobiDBLite consensus disorder prediction 449 480 - -
Chy04g01960 518 Gene3D - 99 161 - -
Chy04g01960 518 Pfam Myb/SANT-like DNA-binding domain 98 184 IPR044822 -
Chy04g01960 518 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01960 Chy-Chr4:25522104 Chy10g01258 Chy-Chr10:17126598 1.26E-76 dispersed
Chy04g01960 Chy-Chr4:25522104 Chy04g02260 Chy-Chr4:27260336 4.45E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17928 PF13837 Myb_DNA-bind_4 2.90E-19 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01960 - - csv:101209675 984.941