Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01967 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACTAGGGAACCGGGTTTGAAGAAGCCCCGACTTGCCGATGAGGCTGACCGCGGTGCCAATATTAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTGTCTGGGAACAATATTGCGCAACAACCCAGATTTCGACCAAGTGATAGGGATTCGGGAAGTAGTGATTCTGGTCGAGGAGGGTATCAGCCTCAGCCACCGCAGCATCAGGAGCTTGTGAGTCAGTACAGGACCGCCCTTGCTGAGCTGACTTTCAATTCCAAACCAATCATCACCAATTTGACCATAATCGCGGGTGAAAATCTTCAGGCTGCGAAGGCGATCTCTTCCACCATTTACGCCAACATTCTCGAGGTTCCTAGTGAGCAGAAGCTACCATCACTTTATCTACTGGACAGTATTGTAAAGAATATTGGAAGAGATTACATAAAATACTTTGCAGCAAAACTGCCGGAGGTATTCTGCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCTTCAAACTCTGCAGATTATTGAGAAAGAACTTGGATTCGTGCCTAGTGGTAGTTCTTCTTCTGTGGCCATAACCTCAAAGCCAGATTTGCAGGCACAACGTCCAACTCCCCACAGTATCCATGTAAATCCGAAGTATATAGAGCGACAACGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATAGCTACTGATGCTACTGGCGGTACGACAAATGTAAGTCAGGATGTTGCTCAAGCAAAAATTAGTACTGGACGTCCATGGGCGGATGCTCCTATCAAGGTGCTTGACATTCAGCGCCCCCTTAGAGATGCACAAAATGATATGGCTCAAGAGAAGAACGTCACAGCTGGATATTCAGACTACGAATATGGTTCTGATCTTTCAAGGACATCAAGTGTCGGAAGAAGGGTCGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAACTTGTCTGAGAAACTATCTGGGCAAAGAAATGGGTTCAACATGAAGCTTGGATATGAAAATTACTCTGCACCCAAGTCTACAAACACAGGTGCACGTTTACTGCCTGTGCAAAATTTTTCGAGCAGCAGCAACAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGACATGAACTCTATGTTGACAAGTCATGGTGCACCTGGTATCACCAGTAGCGCTGGAAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATTGACAATAAGCATTTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCTCAGTCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAGCAAAGGTCATCAACGTGGCAACTGCAGGAATCAATACCTCTGGATGGGCTGAGAGGCGGGGTTCCTAGAAAGAATTCAGGTCAGTCAGGAGGCTATGGTGCTACTCTTACTGCGTTGTCAGGTACTAACTCTTCTGTGGATCAAATGGGAGGTCGACCACAGATCACACCATCTAGTATTGGGGCTTCAGGACATGGGTTTCTGAATAAAGGAAGTTCAGGGCCCCTTGGGAATGTAGGCCATCAAAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAGCCACCCTTGCACCAACGCTCATCTTCACAATTGTTAGTGGATCATGTTCCTCATCAAGTACATGACCATAAAACAACTTCATTTTCTAATCTTGATCCACGTAAAAGGCATATACAGGATGCTGCCCTTGGCCTGCATCCCAGCGTTCGACCAGATAGTCTTCAAAAGCCACAGCCTCATGACCTACAAGCTTTAGCTTCATCCATACCCGGGTCTCAACCAAGGCACCAGTTCTCTTTATCTGAGTCGCTGAAACCTGATGTCACACAGTCAGAACTTTCTAGTCAGCTTGCAGCATCAATTCCGGGCACCGATTTTGGACCATCGTCATCAGCTGGGACAGTGCCAGATCGATTACCTGCAGAAATTTTGGGAAACCCAAGCACAAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGACTTTTTTCCAACCATTCAATAACCAGTAACATGCAGCAGAATATCAGCTTCCAAGATGTGGGAAATATGAAACCCCGTTCAAGCATTAAACCTCCTTTACCAAGCCGGTCTTCTCCTGCTCATACATTCTCGGAGCCAAAGATTCAGGGAGAATCTTCAGTAGGTCCTCCATCACTTGAAAGCCCATCAACTATGGTTAAGTTGTCTCGGACAAAGGTAGAAGAACCATTGTTGCCATCTGATCCACTTCCACCTTCATCTCCTATGGATAGTGCATCTACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGGCTTATCTCTGCCTCAAAAGGAGAATCAACGAATAGTGTGACATCCCAGATGCCTTCACAGCCTGAAAATTTGAAGTCAGGTGATGCTGTGACTAGTTCTGTACCAGTTCCTTCCATCCCTGTTTCTTCTTCCTGTCACTCATCTACAAAAATCAAATCACCTTCAAAAGTTGCTGCTAAGAGCTCTACTAGTCCACCTCCATCTGCCACAACTGAGATAAACAACCTCATAGGTTTTGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACAATATTCCATATCAATGTAAGATCTGTGGTCTTAGACTGAAATGTGAAGAACAGTTGGATACTCACTCACGGTGGCACACATTAAGAACCGAGGCAAACAATTCAAGTAGAGCACCAAGAAGATGGTATTCAAGTTCAGATGATTGGATTTCTGGAAATGCTAGATTTCTACTTGATGCTGCAACTTCTCTGGACGAATCCGATTTGATGGAAGAAGATAATGAGCCAATGGTTCCTGCTGATGAAGATCAATTTGCATGTGTTATATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAGTTGGGTGATTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGTGGGTAGCGAGGTTGGAAGTACAAATGAACAAGTTGCTAGAGGACCTATTGTACACACAGCTTGTTTAACGGAAAGTTCAGTATATGACGTGGGACTAGCAACTGATATTAAGATGGCCAATGATAGTGCAAATGCTATGGCATTGGACTGGAAATGGATGTATGATGCTTCCCCTGCAAAGCGTCATATCGGAACTACTCTAGCGGACATTCTACTCGTGCAATTGGCGGGGGGATGGAAAAGGGAGTATGGATATGAGTGCATCACTCGTGGTAGTTCGGTTGATTACCACAGGAGATAA 3432 45.1 MEMESSRRPFDRTREPGLKKPRLADEADRGANINGRPFPQRPVVSGNNIAQQPRFRPSDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISSTIYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPLQTLQIIEKELGFVPSGSSSSVAITSKPDLQAQRPTPHSIHVNPKYIERQRLQQSGRVKGIATDATGGTTNVSQDVAQAKISTGRPWADAPIKVLDIQRPLRDAQNDMAQEKNVTAGYSDYEYGSDLSRTSSVGRRVVDEGRDKPWSSAGSNLSEKLSGQRNGFNMKLGYENYSAPKSTNTGARLLPVQNFSSSSNNRVLSTNWKNSEEEEFMWGDMNSMLTSHGAPGITSSAGKDQWTPEDSDNSGIDNKHLSVRDTGASVDREASSDSQSSEQRELGDSGQQRSSTWQLQESIPLDGLRGGVPRKNSGQSGGYGATLTALSGTNSSVDQMGGRPQITPSSIGASGHGFLNKGSSGPLGNVGHQRFPSRSVAFPSGQPPLHQRSSSQLLVDHVPHQVHDHKTTSFSNLDPRKRHIQDAALGLHPSVRPDSLQKPQPHDLQALASSIPGSQPRHQFSLSESLKPDVTQSELSSQLAASIPGTDFGPSSSAGTVPDRLPAEILGNPSTSSLLAAVMKSGLFSNHSITSNMQQNISFQDVGNMKPRSSIKPPLPSRSSPAHTFSEPKIQGESSVGPPSLESPSTMVKLSRTKVEEPLLPSDPLPPSSPMDSASTETSNVVNDASSPISNLLSSLVAKGLISASKGESTNSVTSQMPSQPENLKSGDAVTSSVPVPSIPVSSSCHSSTKIKSPSKVAAKSSTSPPPSATTEINNLIGFEFSSHVIRKFHPSVISGLFDNIPYQCKICGLRLKCEEQLDTHSRWHTLRTEANNSSRAPRRWYSSSDDWISGNARFLLDAATSLDESDLMEEDNEPMVPADEDQFACVICGELFEDFYSQELGDWMFKGAMYITIPSVGSEVGSTNEQVARGPIVHTACLTESSVYDVGLATDIKMANDSANAMALDWKWMYDASPAKRHIGTTLADILLVQLAGGWKREYGYECITRGSSVDYHRR* 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25566103 25572632 - Chy4G086850.1 Chy04g01967 225866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01967 1143 MobiDBLite consensus disorder prediction 414 435 - -
Chy04g01967 1143 SUPERFAMILY ENTH/VHS domain 78 204 IPR008942 -
Chy04g01967 1143 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 502 540 - -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 633 680 - -
Chy04g01967 1143 CDD CID_Pcf11 83 195 - -
Chy04g01967 1143 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1074 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Chy04g01967 1143 MobiDBLite consensus disorder prediction 436 454 - -
Chy04g01967 1143 SMART 558neu5 81 203 IPR006569 -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 44 78 - -
Chy04g01967 1143 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1074 - -
Chy04g01967 1143 ProSitePatterns Zinc finger C2H2 type domain signature. 932 952 IPR013087 -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 730 809 - -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 740 777 - -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 1 78 - -
Chy04g01967 1143 Gene3D - 73 203 IPR008942 -
Chy04g01967 1143 ProSiteProfiles Zinc finger C2H2 type domain profile. 930 957 IPR013087 -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 455 485 - -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 331 351 - -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 633 688 - -
Chy04g01967 1143 Pfam CID domain 88 193 IPR006569 -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 833 896 - -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 414 577 - -
Chy04g01967 1143 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01967 Chy-Chr4:25566103 Chy12g00809 Chy-Chr12:13126431 1.25E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01967 K14400 - csv:101223169 2030.76