Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01970 ATGCCCGGCAGGAGGTTGAACTATACGCTTCTAAGTCAAATTCCAGACGACCAATACAGTGGCGGCGTTGACGGAGCTTCGACATCTTTCATAGAAACATCATCGGGAGAGGGGAAGAACGATAGGAGGAAGTTAGAAAGAGGATTGGATTGGGAAGTTGCTGGTGATCCTAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAATACTATGCACCGACACCATCTACTACGGTGGCTAACGAGACAGATGTGTTTGGTTGTACGCACGATGATGTGCTTAGAGTTGGAGGAGATTCGAGAGCACAGGCAGGCGAGATGGCCGCTGGGGCTGGAGGATCTTCTGCTAAGACCTGGGCCCAACAGACGGAGGAGAGTTATCAGCTGCAGTTGGCATTGGCGCTACGGCTTTCATCTGTGGCGACTTGTGCTGATGATCCTAATTTCTTGAATCCATTTCATGATGACTCAGCTTTGAGGAGGCCGATAGGTTCTGCTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTAGACAAAGTCCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTATGGACTGTGTGCACCAGCCTGCCTGATAACGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTCTGATTGATCGGTGCACTGATCCCAACTTAAAAGACTTCCAACATTGGGTCCAAAACATCTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGGCCAGCTTGCAGAACTTGTCTGCAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGACGCATTGGTGTCCATCTGGAAGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTTTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGGTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGATTTAATTGGCAATCCTGGTCGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCACCATTGCGATTTCCACGTCTAAATCCAGTAGAGCCTGCCACCGATTTCAGGTTACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCTTCATGTAATCATTCAGAAATTACTGTGGATGGAGAAGATGGCGCACTTCCATTGTATCCAAAGCAGTTTGATAGGAAATTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATCCAAAAACTTCACAGCCTAACTCCCATGACAGAGATTTCCAACTGTATAAACCACGTGATAATTCTCATAGTGTTATTCAACCAACTGTCCTGGTTGAGGATTCAATCCCACTGAAGTACATTCCACATAATAACCGTGGAAGCATGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGATGTAAGATTTGCAGCGGGAGGTCAGCTAATACCAAGCAATCGAAGTAATACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGGGTGATCTTGTTTTAAAAGAAAGAATAGGAGCAGGTTCCTTTGGAACTGTGCATCGTGCTGATTGGCGTGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATTTCTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTGTCCATTGTAACCGAATATCTATCGAGAGGTAGCTTGTACAGGCTTTTGCACAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCTAAATCTGCAGCTGGAACGCCTGAATGGATGGCACCAGAAGTACTACGTGATGAACCATCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTCGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCAGCATAATGGAAACCTTGAAACCAATGACTAAACAAGCGCCACCTCAACAAAGTCGTACAGACACACTCTCAGTTATGTGA 2607 45.15 MPGRRLNYTLLSQIPDDQYSGGVDGASTSFIETSSGEGKNDRRKLERGLDWEVAGDPRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDVFGCTHDDVLRVGGDSRAQAGEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFHDDSALRRPIGSAEAVSHRFWVNGCLSYLDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDRCTDPNLKDFQHWVQNISCSSITTEEVVGQLAELVCRSLGGSVSGEDALVSIWKECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGRLYEPDSLLNGPSSILISSPLRFPRLNPVEPATDFRLLAKQYFSDCQLLNVVFDEASSCNHSEITVDGEDGALPLYPKQFDRKFTNRSNQMLVTGDSDEKSILLHPKTSQPNSHDRDFQLYKPRDNSHSVIQPTVLVEDSIPLKYIPHNNRGSMQSLLDMSQPRMDSTMDVRFAAGGQLIPSNRSNTLPLGAEDLDIPWGDLVLKERIGAGSFGTVHRADWRGSEVAVKILTEQDFHPERVNEFLREVAIMKFLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSSIMETLKPMTKQAPPQQSRTDTLSVM* 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25583218 25591536 - Chy4G086880.1 Chy04g01970 225869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01970 868 Gene3D Phosphorylase Kinase; domain 1 588 673 - -
Chy04g01970 868 ProSitePatterns Protein kinases ATP-binding region signature. 601 622 IPR017441 GO:0005524
Chy04g01970 868 PRINTS Tyrosine kinase catalytic domain signature 775 797 IPR001245 GO:0004672|GO:0006468
Chy04g01970 868 PRINTS Tyrosine kinase catalytic domain signature 756 766 IPR001245 GO:0004672|GO:0006468
Chy04g01970 868 PRINTS Tyrosine kinase catalytic domain signature 669 682 IPR001245 GO:0004672|GO:0006468
Chy04g01970 868 PRINTS Tyrosine kinase catalytic domain signature 709 727 IPR001245 GO:0004672|GO:0006468
Chy04g01970 868 PRINTS Tyrosine kinase catalytic domain signature 819 841 IPR001245 GO:0004672|GO:0006468
Chy04g01970 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Chy04g01970 868 CDD STKc_MAP3K-like 601 848 - -
Chy04g01970 868 SMART serkin_6 595 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01970 868 SUPERFAMILY Protein kinase-like (PK-like) 578 848 IPR011009 -
Chy04g01970 868 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 132 863 - -
Chy04g01970 868 Gene3D Transferase(Phosphotransferase) domain 1 674 863 - -
Chy04g01970 868 Pfam Protein tyrosine and serine/threonine kinase 596 848 IPR001245 GO:0004672|GO:0006468
Chy04g01970 868 MobiDBLite consensus disorder prediction 19 35 - -
Chy04g01970 868 MobiDBLite consensus disorder prediction 19 43 - -
Chy04g01970 868 Pfam Ethylene-responsive protein kinase Le-CTR1 191 395 - -
Chy04g01970 868 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 132 863 - -
Chy04g01970 868 ProSiteProfiles Protein kinase domain profile. 595 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g01970 Chy08g00913 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00201 Chy-Chr4:1853375 Chy04g01970 Chy-Chr4:25583218 3.64E-63 dispersed
Chy04g01970 Chy-Chr4:25583218 Chy12g01404 Chy-Chr12:18151135 2.76E-38 dispersed
Chy02g01142 Chy-Chr2:8085783 Chy04g01970 Chy-Chr4:25583218 1.08E-32 transposed
Chy02g02083 Chy-Chr2:25168958 Chy04g01970 Chy-Chr4:25583218 1.09E-50 transposed
Chy07g00239 Chy-Chr7:1908825 Chy04g01970 Chy-Chr4:25583218 1.69E-32 transposed
Chy07g00273 Chy-Chr7:2136522 Chy04g01970 Chy-Chr4:25583218 1.82E-18 transposed
Chy11g01573 Chy-Chr11:22290741 Chy04g01970 Chy-Chr4:25583218 6.68E-97 transposed
Chy11g00919 Chy-Chr11:12566046 Chy04g01970 Chy-Chr4:25583218 1.05E-74 transposed
Chy04g01970 Chy-Chr4:25583218 Chy08g00913 Chy-Chr8:16570660 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71223 PF07714 PK_Tyr_Ser-Thr 9.20E-70 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01970 K14510 - csv:101208452 1696.02