Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01978 ATGATGATGGTGGAGAAGGAGGAGAAGGTGGGGATGAAGATTTTCCATTCAGCAATAGTTTTCTTTTTCTCTCTTACCCTTTTGGTTTCTCCTTCTTTCTCTTTAGATGATGATTCTTTTGCACTAACTCGTTTCCGTCTTCAAGCTGATTCCCATGGCGGTTTACTAAGAAATTGGACTGGTTCTGATCCTTGTGGTTCTTCATGGCGTGGAGTTCAGTGCTCTGTTAATGGCCGTGTTGTTGCTCTTTCTCTTCCTTCTATGAATTTACGAGGCCCCATTGAGTCTCTAGCGCCGCTTGATCAGCTTCGCCTGCTTGACCTCCATGACAACCGTTTGAATGGAACCATTTCGCCGCTTGTTAACTGTACGAACCTTAAGCTGTTGTATCTTTCCGGTAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTTGTCACTCAGGCGACTTCTCCGACTGGACTTGTCGGATAACAACATCCGCGGTGGAATTCCTGAGGATATTTCTAAATTGTCTCGGCTCCTCACGTTACGTTTGCAAAACAATGTCCTCTCCGGTACGGTGCCCGATCTCTCTGTTTCGCTTGTGAATCTCACTGAACTTAATTTAACAAACAATGAACTGTACGGGCGGTTGCCGGACGGGATGATGAAGAAATTCGGTGAGAAGAGTTTCACCGGAAACGAAGGGGTTTGTGGGTCGAGTCCATTGCCGATCTGTTCAGTTACTGGTTCGGCGCCGGCGTCGGATCCTACTAGAACGGTACCGTCAAATCCAAGTTCATTGCCGCAAAACCCTATTATTGGTCCGAACAGTAAAGAATCTCGAAAAGGACTGAGCCCTGGCGTGATTGTCGCGATTGTGATCGCGAATTGCGTTGCATTGCTTGTGATTATCTCGTTCATCGTTGCGTATTACTGCGCTCGTGATCGTGATCGGAGTTCAAGCTCCATGACCGGAAGCGAAAGCGGAAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAAGTATACGCTAATGGCGGTGGTGACAGTGATGGCACTAACGCTACAGACAGAAGCAAGCTAGTCTTCTTCGATTGGAAGAAGCAATTCGAACTTGAAGATTTGCTGAGAGCATCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGAACGGTTTACCGGGCAGTTCTTGACGACGGTTGTACGGTGGCTGTGAAGAGATTGAAAGATGCAAACCCATGTCCGAGGAAGGATTTTGAGCAGTATATGGATGTGATCGGAAAGCTGAAACATCCCAATATTATCCCCCATGGCAACGTCAAATCTTCCAACGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTGTCTCTACTTCTCAACCCTGTCCATGCCATTGCAAGGTTAGGGGGCTACAAGGCCCCAGAGCAAGACGAGACAAAACGTCTATCTCAAAAAGCAGATGTTTACAGCTTTGGTGTTTTATTGCTTGAAGTCTTAACGGGTCGTGCACCATCTCTCTACCCATCGCCTTCGAACCCGCGAAGCGACGACGAAGAGCAACCAGTGGACCTCCCGAAATGGGTTCGATCCGTGGTGAAGGAAGAGTGGACAGCTGAGGTTTTCGATCCAGAGCTATTGAGGTACAAGAACATTGAGGAGGAGCTTGTGTCTATGCTTCATGTTGGGTTGGCTTGTGTTCTTCCTCAGCCTGAGAAGAGACCAACAATGGCGGAAGTGGCAAAGATGATAGAAGATATTAGGGTCGAGCAGTCCCCGCTCGGAGAAGATTATGACGAATCACGTAATTCGCTTTCGCCTTCCTTAGCCACCACAGAAGATGTCATACACGCCATCAACATTCGTACCCTTAAGAACTGCCTCGGCATGAACTAA 1896 47.89 MMMVEKEEKVGMKIFHSAIVFFFSLTLLVSPSFSLDDDSFALTRFRLQADSHGGLLRNWTGSDPCGSSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRLLDLHDNRLNGTISPLVNCTNLKLLYLSGNDFSGEIPPEILSLRRLLRLDLSDNNIRGGIPEDISKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTELNLTNNELYGRLPDGMMKKFGEKSFTGNEGVCGSSPLPICSVTGSAPASDPTRTVPSNPSSLPQNPIIGPNSKESRKGLSPGVIVAIVIANCVALLVIISFIVAYYCARDRDRSSSSMTGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSNPRSDDEEQPVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDVIHAINIRTLKNCLGMN* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25649898 25655013 + Chy4G086960.1 Chy04g01978 225877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01978 631 Gene3D Transferase(Phosphotransferase) domain 1 433 608 - -
Chy04g01978 631 MobiDBLite consensus disorder prediction 313 348 - -
Chy04g01978 631 SUPERFAMILY Protein kinase-like (PK-like) 378 584 IPR011009 -
Chy04g01978 631 Gene3D Ribonuclease Inhibitor 38 147 IPR032675 -
Chy04g01978 631 MobiDBLite consensus disorder prediction 243 276 - -
Chy04g01978 631 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Chy04g01978 631 MobiDBLite consensus disorder prediction 243 271 - -
Chy04g01978 631 Gene3D Ribonuclease Inhibitor 148 240 IPR032675 -
Chy04g01978 631 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 431 608 - -
Chy04g01978 631 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 431 - -
Chy04g01978 631 ProSiteProfiles Protein kinase domain profile. 273 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01978 631 SUPERFAMILY L domain-like 37 216 - -
Chy04g01978 631 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515
Chy04g01978 631 Pfam Protein kinase domain 433 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g01978 631 MobiDBLite consensus disorder prediction 313 328 - -
Chy04g01978 631 Gene3D Phosphorylase Kinase; domain 1 347 432 - -
Chy04g01978 631 PANTHER LRR RECEPTOR-LIKE KINASE 431 608 - -
Chy04g01978 631 PANTHER LRR RECEPTOR-LIKE KINASE 24 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01978 Chy-Chr4:25649898 Chy10g01166 Chy-Chr10:16515367 1.24E-111 dispersed
Chy04g01978 Chy-Chr4:25649898 Chy06g01272 Chy-Chr6:11694990 3.68E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71224 PF00069 Pkinase 1.90E-13 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01978 - - bhj:120091526 1022.69