Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01979 ATGGCTTCCTGTGACGACGACTTCTCTCTCCTCAACGACGATCACCACCACCAACACCACCACCAATCCACTACCAACCACCACCATGTACCCACGCCTCACCACATCCATCAATCCTACACATCTCACCGCTTCACGCCTCGATCGTCTTCCGTTCACGCGCCGCCACAGCCCTCTCCCAATCAACCGGCTCAACCGATTCTTGCACCCTCCGGAAGTCCGAAGAAGATCGGTGGCCCGATAGACGAGGAAGAGGAGGAGGAGGATACGGAGGATTATGGTGATCCTGCTTTCTGCTCCAGTTCGTTTGATAATGGAGATCCCAACCGGCTTGGTGTTGGTGTTGATGTGCGGGTTGAGAAGAGGAAGGATCAGTCGGACGAGCTTGCGGAGGAAGGAGGTTCTTATACTAGTTATAAAAGAGCGAAACCTTCCTCCAGCGGCGGAGAATACAGGAAGGATCGAGAGGAGTGGAGTGATGCGGCTATTTCCTGCCTTCTGGATGCGTATACCGAGAAATTTACGCAGCTGAATAGGGGGAATTTGAGGGGGAGGGATTGGGAGGAAGTGGCTGCAACTGTCAGTGAACGGTGCGAGAAGCAGAGCAAGAGCGTAGAGCAGTGTAAGAATAAGGTCGACAACTTAAAGAAGAGGTATAAGTTAGAGAGACATAGGATGAGTAACGGTGGCGTCTCGATCAGTCACTGGCCTTGGTTTAAGCAGATGGAGCAAATTGTTGGAAATTCTTTGACAATGAAGGTTGTTTCTGATGAGGATCGGAGTGTTGCCTCCTCAGGGAATACTCCGAGGATATCAAAGAGGTACGTTCTTCCCACACCCAATACCGCTGGTCAAATGAATAACATAAAACCCAAAGCAGTTACCAGTCCAAGGTGGCGAAGAGTTGTCTTTAAAATCAGTGGTACGGCTCTTGCAGGGACTGGTCCTAACAACATCGATTCAAAGGTTGCAATGGCAATTGCCAGAGAAGTTGTAATGGCTTGTCGCCTGGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGTAACTTCTTCTGTGGAGACTCTTGGGTGACTACAACAGGTTTAGATAGATGTACAGCATACCAAATTGGGTACGTTTTCACACACCACCTTGTTGATACTAAATCTGGATCCTCTTTCTCATTATATAGTCAGCCGATTTTACTACATTGA 1194 49.08 MASCDDDFSLLNDDHHHQHHHQSTTNHHHVPTPHHIHQSYTSHRFTPRSSSVHAPPQPSPNQPAQPILAPSGSPKKIGGPIDEEEEEEDTEDYGDPAFCSSSFDNGDPNRLGVGVDVRVEKRKDQSDELAEEGGSYTSYKRAKPSSSGGEYRKDREEWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVSERCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNGGVSISHWPWFKQMEQIVGNSLTMKVVSDEDRSVASSGNTPRISKRYVLPTPNTAGQMNNIKPKAVTSPRWRRVVFKISGTALAGTGPNNIDSKVAMAIAREVVMACRLGVEVAIVVGGRNFFCGDSWVTTTGLDRCTAYQIGYVFTHHLVDTKSGSSFSLYSQPILLH* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25656126 25658507 - Chy4G086970.1 Chy04g01979 225878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01979 397 MobiDBLite consensus disorder prediction 16 154 - -
Chy04g01979 397 Gene3D - 290 386 IPR036393 -
Chy04g01979 397 PANTHER URIDYLATE KINASE 1 373 - -
Chy04g01979 397 Pfam Myb/SANT-like DNA-binding domain 155 245 IPR044822 -
Chy04g01979 397 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 373 IPR011817 GO:0006221|GO:0009041
Chy04g01979 397 MobiDBLite consensus disorder prediction 114 130 - -
Chy04g01979 397 MobiDBLite consensus disorder prediction 53 67 - -
Chy04g01979 397 Gene3D - 158 221 - -
Chy04g01979 397 SUPERFAMILY Carbamate kinase-like 297 374 IPR036393 -
Chy04g01979 397 Coils Coil 198 225 - -
Chy04g01979 397 MobiDBLite consensus disorder prediction 35 52 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01043 Chy-Chr2:7148999 Chy04g01979 Chy-Chr4:25656126 4.84E-22 dispersed
Chy04g01979 Chy-Chr4:25656126 Chy12g00092 Chy-Chr12:940983 1.50E-20 dispersed
Chy04g01979 Chy-Chr4:25656126 Chy12g00091 Chy-Chr12:933407 1.41E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17930 PF13837 Myb_DNA-bind_4 3.50E-20 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01979 - - csv:101222460 721.465