Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01980 ATGTTTTCAGGAATGAATTCGTCAATGTTGGGATTGGAATTACCACTTCATCAAAACCCAACAAATCCCACTAATCCTCACCAATTACATCACCCTCCAATGGTATCTTATGTCCAACATGACCCTCATCACCACCAACAACCGCCGTCGGTCTCCGTGAAATACCCTTTTCCGACAAAGGCTAAGCCACAGCAGTCGAATCTCAGTGACGACGAGGAGCAGGGGTTCGCGGCGGATGACAGTAATGGAGATGGCAAGAAGAAAATCTCGCCGTGGCAGAGGATGAAATGGACGGATATGATGGTTCGGCTGTTGATTACGGCGGTGTTCTATATCGGCGATGAAGGTGGGTCGGAGCCGGTGGACCACGTCGGGAAGAAAAAACCAGTGGGGCTACTGCAAAAGAAGGGGAAATGGAAATCGGTATCCAGAGCAATGATGGAAAAAGGATTCTACGTTTCACCACAGCAATGTGAAGACAAATTCAACGATTTAAACAAAAGATACAAACGAGTTAACGATATTTTAGGGAAGGGAACAGCCTGCAAAGTAGTAGAGAATCAAACATTACTCGATTCAATGGAATTAACACCAAAAACAAAAGAAGAAGTACGAAAATTACTCAATTCTAAACATCTTTTCTTCAGAGAAATGTGCGCTTACCACAACACTTGCCGTCACAGCACCACCCACCCCTCGCCGGACGCAGCAACAGAACCATCCCACCTTCCACAACAACAACAGCAACTATGCTTCCACGCCACAGATACGACAACCTCCGCCAGTATAGCAGCCGGCGAGGGTTCAAAAAGCGGAGATGAGGAGGAAGAGGAGGAGGAAGAGGAGGAATCGGAAGAGGAGGAAGAGGATGAGGAAACAGAAGGGAGACAGGAAGAAGAGGAGGAAACGGAATCGAGGAAGAGGGCAAGGAAAGGGGGGATGATAACAGCTGGGATGCAGCAGTTGAGTGCGGAGGTGATGGGCGTTATATCGGACGGGGGGAGGAGTCCATGGGAGAAGAAGCAATGGATGAAGAGCCGATTGATTCAGCTTGAAGAGCAGCAAGTGAGCTGGCAAACGCAGGCATTCGAGCTGGAGAAACAGAGGCTGAAATGGGTGAAGTTCAGGAGCAAGAAGGAGAGGGATATGGAGAGAGCGAAGCTGGAGAATGAGAAGAGAATGCTGGAAAACGAGAGGATGATGCTGATGGTAAAGAAGAACGAGTTGGATTTGATGGGTATGCAACATTATCAGCAGCAACAGCAGCAGCATTCGTCGAACAAGCGAGGGGATCCATCGTCGATTACAGGATGA 1314 48.4 MFSGMNSSMLGLELPLHQNPTNPTNPHQLHHPPMVSYVQHDPHHHQQPPSVSVKYPFPTKAKPQQSNLSDDEEQGFAADDSNGDGKKKISPWQRMKWTDMMVRLLITAVFYIGDEGGSEPVDHVGKKKPVGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQTLLDSMELTPKTKEEVRKLLNSKHLFFREMCAYHNTCRHSTTHPSPDAATEPSHLPQQQQQLCFHATDTTTSASIAAGEGSKSGDEEEEEEEEEESEEEEEDEETEGRQEEEEETESRKRARKGGMITAGMQQLSAEVMGVISDGGRSPWEKKQWMKSRLIQLEEQQVSWQTQAFELEKQRLKWVKFRSKKERDMERAKLENEKRMLENERMMLMVKKNELDLMGMQHYQQQQQQHSSNKRGDPSSITG* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25660028 25661341 - Chy4G086980.1 Chy04g01980 225879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01980 437 MobiDBLite consensus disorder prediction 260 316 - -
Chy04g01980 437 PANTHER F16F4.11 PROTEIN-RELATED 4 434 - -
Chy04g01980 437 MobiDBLite consensus disorder prediction 271 299 - -
Chy04g01980 437 MobiDBLite consensus disorder prediction 12 29 - -
Chy04g01980 437 Coils Coil 378 405 - -
Chy04g01980 437 Pfam Myb/SANT-like DNA-binding domain 94 220 IPR044822 -
Chy04g01980 437 MobiDBLite consensus disorder prediction 414 437 - -
Chy04g01980 437 MobiDBLite consensus disorder prediction 12 89 - -
Chy04g01980 437 Coils Coil 270 302 - -
Chy04g01980 437 MobiDBLite consensus disorder prediction 227 247 - -
Chy04g01980 437 Gene3D - 97 171 - -
Chy04g01980 437 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 4 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01980 Chy-Chr4:25660028 Chy05g00123 Chy-Chr5:960373 5.04E-83 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17931 PF13837 Myb_DNA-bind_4 2.60E-21 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01980 - - csv:101222223 794.267