Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g01986 ATGGACAAAGCTTCCAAAAACCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTTGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCGGCAGCTGCGGCTCTCTTTATTCAGAGAGTTTGGAGGCGCTTCAGAGTGACTAAGATTGCTGCTTTGCAGCTTCAAGAAGAATGGGAGGATTTGTTGAATAATCATTCTGGTGCACGGGGTGGCACATTCATTTCCTGTAATATTTTGAGACCATTTCTCTTCTTTATCTCGTCTTTTCTGAAACGACCGCAAAATATCAAGACCAAAGATATAGATTGTATGAAGAATTGCTTTAAAATCTTGTTTGAAAGCATCAATTCTACTGAATCGAAGAACAACTTCTGCTCCTTGGCCACTGGTACATCTGAAGAAAGAAGAATGTGGACTTACCAATCAAGGAAGCTTATTTCTGTATGCTTATTTATTCTTGTGCATTTTGACAAATTGCAAGTGAAGGAGCAAGAAATTGTTGTTACGACCTCTTTGGCCATGCGCCTTGTAGTTGTCTTAACCGATCATCATGTGTGGAAGAATGCTAATGAAAGTAGTCAGGCTGTTGCTGATGCAGCATTGGAGGATTTAATTCATTATCTGGGAACTTCTGAAAGTGGTCTTTACATTTCAGTCAGGGAATACATGTATAAATGGAGTGTCCTCCAGTCCACACAAAACAACAGTACCATCAAGGCAAATGATTTATTAGTTATTACTGTGAGTGCTATAACTTTAGCATTACGACCATTTCATTTAATGATTTCTGATACGATTGGTACTACTCCGTGGGAAGTGCATCATGTTGCTGAACAGTTTTGCCTGTTTCTACTTACAATTCCTGGGTTTATTCAAAATCTGCCACAACTTCTTGTGCCAGCTGTAAAGCATCGATCTATCTTGTTACCATGCTTCTCGACTCTATTGGCCAAGAAAGAGACAATTTTGCTGGGAATGTCTAATTTAAATCAATTATCAGTTGAATGTGGCTCTAAGGTTGATCAAGCAGTCGGGTGGGCTCTTGCTAACATTATATGTTTGGTAGCAGGGAGTGAAACTAAGGCAAGGGATTCTGGTTGGTTCAGTCAGAGTTTAGACTATGTGTTGTATGTTCATGTGGTTGTCACTTTGGCAGAAAGCTTTTTGGATTTGAGTGGGGATTTAGGATGTGGTAAAAAGGAGAACCAAGATATCCTGAGCGACAATGTAACTTCTTATGAACCCTCTAATGCAGCTGTTCCCAAGAATGAAACGACATCTATGTCCTTGAGCACATCTTTCATTGATATGCTTAGGCCTGTTTGTGATCAGAGGCATCTCACAGATCTTTTGAAAATAGTAAATACAGATGTTTATTCTGATGTTAGCCTCACACAATCAAATAATATGGAATGTATGAAAAGCTTGAAACTGCTTGATATATCATACTTCTACATGTACATGCTCAGAATATTTTCATTATTGAATCCAGTGGTTGGATCCTTACCTATTCTTAATATGTTATCTTTTACTCCTGGATTTCTTGTTGATCTGTGGGGAGTGTTAGAAAGTTCCCTTTTCCCCAGTGATGTTGATGAACCTGAAGATCACTTTCCTGGCTCAAGTAAAATATTAAGTAAAGGAAAAAATGAAGGTTCTGGCAAAAAGCAAAATCAAGTCAGTAAGGATGGAAGTAGTAGGTGGGTAACTGTCTTCAATAAGTTCACGAGCAAGTCACCACCAGGTAGTGATCATATGGACACAATTGAAGTACAATCTAGTTCAAGACAGGGGGATGACAACTCGTGCGATTTATGGGACATAAAATCTTTAAGTTGTGGTCCACAAGGTATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGTTAGTTCTAGATGACATAGAGTTCTATGAAAAACAGGTTCCATTCAGGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAACACGCTTGTGTATAATGGTTTATCCCACGGTACTGGTCAGCAAAACACATCCCTTATGGAAACTGCAATCAGGTGCCTGCATTTGATGTATGAGAGGGATTGCAGACATCAGTTTTGTCCTCCTAGGCTATGGCTTTCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATCAGGCAACTTAGGGGCAGATGATACCTCAACAGTTCCAAGTGTAGGATCAATTATTACTACCACACCACATGTGTTCCCATTTGAGGAAAGAGTTGAAATGTTCAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGTTCACGATCATTTGAAATTGTAGTTCGTCGTAGCCATGTTGTTGAAGATGGATTCAGACAGTTAAATTTTCTTGGGTCAAGGCTGAAATCAGCTATCCATGTTTCATTTGTTAGTGAATGTGGCCTTCCTGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTGACTGATATAGCCAAAGCAGCATTTTCCCCCGTATATGGACTGTTCTCTCAAACCTCTACTCCAGACAGGCATCTTATCCCGAATGCAGCTGCACGATATCTCGACAATGGTATCCAGATGATCGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGACTATTCATTTTCGCATGTTTTTGTCCATAAGCTATTAGGGCGGTATAGCTTTCTTGATGAGCTATCAACACTTGATCCTGAGCTCTACAGGAATCTCATGTGTGTCAAGTCTTACGAGGGTGACGTCAAAGAACTCTCGTTGGATTTCACTGTAACTGAAGAATCATTTGGCAAACGACATGTTATTGAGCTTAAACATGGTGGCAAGGATATTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCATGCTATTGCTGATTATAAACTTAATCGACAGATATTGCCTTTCTCAAATGCGTTTTATAGGGGTTTAACTGATCTTATATCACCATCTTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTGCTTTCAGGAGGAAACCATGATATTGACGTCAATGATTTGAGGAATAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACAATTAGTATTTTTTGGGAGGTTATTAAAGGATTTGAACCAAAAGATAGATGTTCGCTTCTTAAATTTGTCACCAGTTGTTCTCGAGCTCCATTACTTGGATTCAAATACCTGCAACCAGCTTTTACCATTCATAAGGTTTCATGTGACGTACCTATTTGGGCTTCAATAGGAGGACAGGATGTCGAGCGGCTTCCAACGGCTTCCACTTGCTATAATACTCTCAAGCTTCCGACGTATAAACGTTCAAGTACTTTGAGATCAAAACTTCTCTACGCGATCAATTCCAACTCAGGATTTGAACTCTCTTAA 3510 39.97 MDKASKNQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAAALFIQRVWRRFRVTKIAALQLQEEWEDLLNNHSGARGGTFISCNILRPFLFFISSFLKRPQNIKTKDIDCMKNCFKILFESINSTESKNNFCSLATGTSEERRMWTYQSRKLISVCLFILVHFDKLQVKEQEIVVTTSLAMRLVVVLTDHHVWKNANESSQAVADAALEDLIHYLGTSESGLYISVREYMYKWSVLQSTQNNSTIKANDLLVITVSAITLALRPFHLMISDTIGTTPWEVHHVAEQFCLFLLTIPGFIQNLPQLLVPAVKHRSILLPCFSTLLAKKETILLGMSNLNQLSVECGSKVDQAVGWALANIICLVAGSETKARDSGWFSQSLDYVLYVHVVVTLAESFLDLSGDLGCGKKENQDILSDNVTSYEPSNAAVPKNETTSMSLSTSFIDMLRPVCDQRHLTDLLKIVNTDVYSDVSLTQSNNMECMKSLKLLDISYFYMYMLRIFSLLNPVVGSLPILNMLSFTPGFLVDLWGVLESSLFPSDVDEPEDHFPGSSKILSKGKNEGSGKKQNQVSKDGSSRWVTVFNKFTSKSPPGSDHMDTIEVQSSSRQGDDNSCDLWDIKSLSCGPQGISKDLSCLLYLFSATYAHLLLVLDDIEFYEKQVPFRLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMETAIRCLHLMYERDCRHQFCPPRLWLSPARTSRPPVAVAARTHEALSGNLGADDTSTVPSVGSIITTTPHVFPFEERVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVVEDGFRQLNFLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPVYGLFSQTSTPDRHLIPNAAARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHVFVHKLLGRYSFLDELSTLDPELYRNLMCVKSYEGDVKELSLDFTVTEESFGKRHVIELKHGGKDISVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNHDIDVNDLRNNTRYTGGYTEGSRTISIFWEVIKGFEPKDRCSLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASIGGQDVERLPTASTCYNTLKLPTYKRSSTLRSKLLYAINSNSGFELS* 1170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25692443 25702029 + Chy4G087040.1 Chy04g01986 225885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g01986 1169 SMART hect_3 819 1169 IPR000569 GO:0004842
Chy04g01986 1169 Gene3D Hect, E3 ligase catalytic domain 927 1006 - -
Chy04g01986 1169 Gene3D Hect, E3 ligase catalytic domains 803 1041 - -
Chy04g01986 1169 MobiDBLite consensus disorder prediction 557 576 - -
Chy04g01986 1169 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1169 - -
Chy04g01986 1169 MobiDBLite consensus disorder prediction 542 576 - -
Chy04g01986 1169 Pfam HECT-domain (ubiquitin-transferase) 856 1169 IPR000569 GO:0004842
Chy04g01986 1169 CDD HECTc 801 1167 IPR000569 GO:0004842
Chy04g01986 1169 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1169 IPR044611 GO:0000209|GO:0061630
Chy04g01986 1169 Gene3D Hect, E3 ligase catalytic domain 1044 1168 - -
Chy04g01986 1169 SUPERFAMILY Hect, E3 ligase catalytic domain 800 1162 IPR035983 GO:0004842
Chy04g01986 1169 ProSiteProfiles HECT domain profile. 825 1169 IPR000569 GO:0004842
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01986 Chy-Chr4:25692443 Chy06g01892 Chy-Chr6:22772035 3.06E-57 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g01986 K10588 - csv:101205886 2263.8