Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02000 ATGGCAGCAGTTTCTCACCCTACGGCTCATGCCTCTCCGGCTTCCCTCTACGTTGGAGACCTTCATCCTGATGTTACTGATGGACAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTTGCCTCTGTTCGTATCTGTAGAGATTCTTCCACTGGACGCTCTCTCTCTTATGGCTATGTCAATTTTATTTCTCCTCAAGATGCAACCAATGCCATAGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATTCGAGTCATGTGGTCACGTCGCGATGCTGATGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGAAAGAGCAAAGGATATGGCTTTGTTCAATTTGAGTCTGAGGAATCTGCAAATGCTGCCATAGAGTCACTGAATGGATTTACTGTTGGGGATAAGCAGATGTAA 519 43.35 MAAVSHPTAHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVNFISPQDATNAIEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQM* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25800912 25802104 + Chy4G087180.1 Chy04g02000 225899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02000 172 Gene3D - 3 102 IPR012677 -
Chy04g02000 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 171 IPR000504 GO:0003723
Chy04g02000 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Chy04g02000 172 SMART rrm1_1 15 88 IPR000504 GO:0003723
Chy04g02000 172 SMART rrm1_1 103 172 IPR000504 GO:0003723
Chy04g02000 172 PANTHER RNA BINDING PROTEIN 8 170 - -
Chy04g02000 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 172 IPR000504 GO:0003723
Chy04g02000 172 Gene3D - 103 172 IPR012677 -
Chy04g02000 172 PANTHER POLYADENYLATE-BINDING PROTEIN 7 8 170 - -
Chy04g02000 172 CDD RRM1_I_PABPs 15 93 - -
Chy04g02000 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Chy04g02000 172 SUPERFAMILY RNA-binding domain, RBD 14 171 IPR035979 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02000 Chy-Chr4:25800912 Chy06g01071 Chy-Chr6:8732649 1.22E-16 dispersed
Chy04g02000 Chy-Chr4:25800912 Chy04g02001 Chy-Chr4:25802223 1.33E-11 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02000 K13126 - csv:101203793 330.102