Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02024 ATGCCGTTTCAAAGGATAGTTATCGCTGTGGGTCGGCCGGAGGAGGCCACCCATCCCGCTGCCCTCAAGTCTGCTTTGGCCGAGTTTATTTCTACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACCCATAATTCACCCACCACTCCTGCTGGCCTCATCATCGCCTCCATAGCTCATGGCTTTGCCCTTTTTGTCGGTGTCTCCACCGCCGCAAACATCTCCGGCGGACACCTTAACCCCGCCGTGACTTTCGGGGTTTTGCTCGGCGGTAACATCACTATCCTTCGCGGCATTCTTTATTGGATCGCTCAGCTCCTCGGCGCCGTCGTCGCTAACTTGTTGCTCAAGTTCGTGATGGTAGACGTGGCAATTACGGGATTCTTGCCAACAGCAGGGGTTGGAATATGGGAAGCATTTGTATTCGAGATTGTAATGACATTCGGTTTAGTCTACACTGTCTACGCCACCGCCATTGATCCCAAGAGAGGTGAGGTGGGAGTCATTGCACCCATCGCCATCGGTTTAATCGTCGGCGCTAACATTTTGGTGGGCGGCCCATTCACCGGTGCCTCCATGAACCCTGCCGTCGCCTTCGGACCTGCCGTCATCTCATGGTCTTGGGCTAACCATTGGATCTACTGGGCTGGCCCTCTCATCGGCGGCGGCTTAGCTGGCATTGTGTATGAACTCTTCTTCATTGGGTTCACCCACGAGCCTCTTCCCACTGCAGAGTACTGA 762 54.59 MPFQRIVIAVGRPEEATHPAALKSALAEFISTLIFVFAGQGSGLAFSKLTHNSPTTPAGLIIASIAHGFALFVGVSTAANISGGHLNPAVTFGVLLGGNITILRGILYWIAQLLGAVVANLLLKFVMVDVAITGFLPTAGVGIWEAFVFEIVMTFGLVYTVYATAIDPKRGEVGVIAPIAIGLIVGANILVGGPFTGASMNPAVAFGPAVISWSWANHWIYWAGPLIGGGLAGIVYELFFIGFTHEPLPTAEY* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25910361 25911825 + Chy4G087420.1 Chy04g02024 225923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02024 253 PANTHER AQUAPORIN-8 7 253 IPR034294 -
Chy04g02024 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Chy04g02024 253 CDD MIP 23 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 PANTHER AQUAPORIN TIP1-1 7 253 - -
Chy04g02024 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 TIGRFAM MIP: MIP family channel proteins 27 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02024 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Chy04g02024 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g02024 Chy08g00880 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02024 Chy-Chr4:25910361 Chy11g00808 Chy-Chr11:11587712 3.94E-36 dispersed
Chy01g02089 Chy-Chr1:25623948 Chy04g02024 Chy-Chr4:25910361 3.29E-91 transposed
Chy03g01245 Chy-Chr3:15524638 Chy04g02024 Chy-Chr4:25910361 1.34E-75 transposed
Chy06g00608 Chy-Chr6:4147482 Chy04g02024 Chy-Chr4:25910361 5.98E-18 transposed
Chy06g01297 Chy-Chr6:12116921 Chy04g02024 Chy-Chr4:25910361 1.53E-26 transposed
Chy09g00756 Chy-Chr9:10013912 Chy04g02024 Chy-Chr4:25910361 1.72E-106 transposed
Chy09g00996 Chy-Chr9:12599781 Chy04g02024 Chy-Chr4:25910361 2.06E-59 transposed
Chy09g01079 Chy-Chr9:13139000 Chy04g02024 Chy-Chr4:25910361 9.28E-97 transposed
Chy12g01348 Chy-Chr12:17763468 Chy04g02024 Chy-Chr4:25910361 3.24E-94 transposed
Chy04g02024 Chy-Chr4:25910361 Chy08g00880 Chy-Chr8:16189217 4.92E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02024 K09873 - csv:101222386 491.886