Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02042 ATGGATATCACGATGAACAAATCTTTCAATCCCCAATCGCAGGTTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTGTTTCATTCCTCTTTCGAAACTCCTCTTCTTATCCCAACGCCCTTGCCCTTGCCGACGCTGACTCCGGCGAATCCCTCACTTTCCGTCAGCTTCAAATCCAAGTCTCCAAGCTCGCTCATGTGTTCATCCAACTCGGGATTCAAAAAGGCGATGTGGTTCTCATATTCGCGCCTAATTCCATTCACTTCCTTGTTTGTTTCTTCGCCATTGTCGCCATCGGAGCCATTGCAACCACTTGTAATCCTGCTTACACTTCCGCTGAACTGTCAAAACAAGTCGCTAACTGCGACCCTAAGCTCGTAATCACCGTTCCCGAACTCTGGGACGTAATCGGTAAACTCAACTTACCTTCTATAATTCTGGGTTCTAAAATTTCGTCAAAATTTTCCCGTTCCAACATCTGGGTTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCTCTTTTGTATTCATCTGGGACGACAGGGATCAGTAAAGGAGTGATTTTAACTCACAGAAATTTCATAACGACGTCTTTAATGGTGGCTCAAGATCAAGAGCTTCTTGGTGATCCTAGAAACGTGTTTTTATGTTTTCTCCCAATGTTCCATGTATTTGGTCTTTCTATAGTTGTTAACTCGCAGCTTCAAAGAGGAAACACCGTTGTTTCAATGGCAAAGTTTGAGCTGGAAAAGGCTTTGGGGTTGGTGATGAAGTACAAGATCACTCATCTTTATGTTGTTCCCCCTGTAATTATATCTTTGACAAAGCAAAAGGTAGTGAAAAATTACGACTTGTCGTCGTTGCGGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGATGAATGCTCTAAGATTATACCTCAGGCCAGGATCATCCAGGGATATGGTATGACAGAAACTTGTGGAGTTATTTCTGTGGAGAATGTGGGAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGCCCAAATTTTGAGTATGGAAACACAGAAACGTCTTCCACCCGGCGGAACTGGGGAAATTTGCGTCCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGAAAGCCACCAGCCAAACTATAGATGATCAGGGATGGGTGCATACTGGAGATATAGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTCATCAAATGTTATGGTTTTCAGGTTGCACCAGCGGAGCTTGAAGCGCTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCCCATCCTGATGATAAAGCCGGTGAGGTCCCTATTGCATTTGTTGTTCGTTCTCCCAATAGCTCGATCAGCGAAGAAGATGTTAAAAATTTTATTGCGGGACAGGTTGCACCATTCAAGAGATTAAGAAAAGTAACATTCACAAGCAGTGTTCCGAAGTCAGCTTCAGGAAAACTTCTGAGAAGGGAGGTCATAGCACAAGTCCGAGCCAAGATGTAA 1638 44.32 MDITMNKSFNPQSQVYTSRRPPIHFPTDPTISIVSFLFRNSSSYPNALALADADSGESLTFRQLQIQVSKLAHVFIQLGIQKGDVVLIFAPNSIHFLVCFFAIVAIGAIATTCNPAYTSAELSKQVANCDPKLVITVPELWDVIGKLNLPSIILGSKISSKFSRSNIWVYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVAQDQELLGDPRNVFLCFLPMFHVFGLSIVVNSQLQRGNTVVSMAKFELEKALGLVMKYKITHLYVVPPVIISLTKQKVVKNYDLSSLRQILSGAAPLGKDVMDECSKIIPQARIIQGYGMTETCGVISVENVGVESTLSGATGSLVSGVEAQILSMETQKRLPPGGTGEICVRGPNMMKGYFNNQKATSQTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPHPDDKAGEVPIAFVVRSPNSSISEEDVKNFIAGQVAPFKRLRKVTFTSSVPKSASGKLLRREVIAQVRAKM* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26006671 26010633 + Chy4G087600.1 Chy04g02042 225941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02042 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Chy04g02042 545 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Chy04g02042 545 Gene3D - 443 544 IPR045851 -
Chy04g02042 545 CDD 4CL 25 536 - -
Chy04g02042 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Chy04g02042 545 Gene3D - 14 442 IPR042099 -
Chy04g02042 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 8 544 - -
Chy04g02042 545 Pfam AMP-binding enzyme 39 447 IPR000873 -
Chy04g02042 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 544 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02042 Chy-Chr4:26006671 Chy12g00816 Chy-Chr12:13246391 0 dispersed
Chy06g01432 Chy-Chr6:15239519 Chy04g02042 Chy-Chr4:26006671 2.50E-35 dispersed
Chy09g01293 Chy-Chr9:14895339 Chy04g02042 Chy-Chr4:26006671 2.96E-24 dispersed
Chy11g00511 Chy-Chr11:5586858 Chy04g02042 Chy-Chr4:26006671 1.24E-133 dispersed
Chy04g02042 Chy-Chr4:26006671 Chy05g00951 Chy-Chr5:14103681 2.00E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02042 K01904 - csv:101204417 1045.8