Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02043 ATGTCACAATATTCTGAAGAGATAAAGACGACTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCCTCTCTTCTCATCCTCTTCCTCCTCCTGACCCATTTATAACCAACAATCCAACACCCGAGAACACTGACCCTGAACACCTCAGACCCACACAAGAGCCTCAAGACGGAGTTGGCAGGGCTAAAAACAGAGAAATGGAGTCTACCACTGATTCCAAGAAGGAAAACGGCGGCGGCGGCGGCACTAGTGGGGAGAAGCCTGAGGCTGTTACCGCCATTGGGTTTGGGGAGCTTTTCAGATTCGCTGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCCGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTATGCCAATGATGTTGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCTTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGATATTCAGTATTTTGATACAGAGGTGCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAATTTCATCCACTATATGGCAACTTTTGTGTCCGGATTCGTTGTGGGTTTCACTGCCGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCCGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCCGGGAATATCGTCGAACAGACAATAGTTCAAATTCGAGTTGTTTTTGCATTCGTGGGTGAATCTAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAGAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCTACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTCAGACACCACGCCACCAATGGTGGACTGGCCATAGCGACTATGTTTGCAGTGATGATTGGTGGACTGGCACTGGGGCAATCTGCTCCGAGCATGAGCTCATTCGCTAAGGCCAAAGTTGCAGCCGCCAAAATCTATCGTATAATTGACCATAAGCCCACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTTGAGCTGAAAAATGTTGATTTCGCATACCCATCAAGGCCAGATGTAAGAATCCTCAACAATTTCTCCCTAACTGTCCCTGCTGGAAAAACTATAGCTCTGGTCGGAAGCAGCGGCTCCGGCAAGAGCACGGTTGTTGCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGACGGACGTGACATAAAAACTTTGAAGCTGAGATGGTTAAGACAGCAGATAGGATTGGTGAGCCAAGAGCCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTATTAGGCAGACCTGAAGCAGACCAACTTGAGGTGGAGGAAGCTGCTCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGAGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATCGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATTCTACTCTTAGATGAAGCAACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATAGGGCGGACCACCCTTGTCATTGCCCATCGACTCTCTACCATTCGGAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTATTTGCTAAAGGAGAGAATGGTGTATATGCCAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTGCTCTCAGTAATGCCAGAAAAAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCCCCAATCATTGCACGGAATTCTTCCTATGGACGATCACCATATTCACGTCGATTATCTGACTTCTCCACATCTGATTTTAGTCTTTCTCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTGGCCTTTAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCCGAATGGCTTTATGCACTGCTTGGTTCTATAGGCTCTGTTGTTTGTGGGTTTTTAAGCGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAGTACTGCTACTTGTTAATTGGACTATCATCGGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTAGGTGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAATACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTAGATGCTAACAACGTCAGATCAGCCATTGGAGACCGGATTTCAGTGATTGTACAGAACACATCACTCATGCTAGTTGCTTGCACAGCTGGGTTTGTTTTGCAGTGGCGCCTATCTCTTGTCCTTGTAGCTGTCTTCCCCGTGGTTGTTGCTGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTCTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAGCTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCGGAAGAGAAGATTGTCAAACTTTTTTCAACCAACCTCGAGATCCCTCTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGGTTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTGAAGCATGGGCTCTCTGATTTTTCGAAGGCAATTCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCCGAAACACTCACTCTAGCTCCTGACTTTATCAAGGGTGGTCGAGCCATGCGCTCTGTATTTGCACTTCTTGACCGTAAAACTGAAATTGAACCTGATGAACCGGACGCCACCCCAGTGCCAGATAAACTTCGTGGAGAAGTTGAATTAAAACATGTTGACTTTTCCTACCCAACCCGTCCTGATATCCCTGTCTTTAAAGACCTTAATTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGTGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCGACATCAGGACGAGTTATGATTGATGGAAAGGATATTCGCAAGTTCAATCTCAAGTCCCTGAGAAAGCACATTGCAATGGTCCCTCAAGAGCCATGCTTGTTTTCTGCTTCCATATATGAGAATATAGCTTATGGCCATGAATCGGCAACTGAAGCCGAGATCATTGAAGCCGCTACTTTGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAGACTTTTGTTGGGGAGAGAGGAGTTCAACTATCAGGTGGACAGAAACAAAGAATTGCAATTGCCCGTGCATTGATCAGGAAGGCAGAGCTTATGCTATTAGACGAGGCAACAAGTGCACTCGATGCCGAGTCAGAACGATCAGTTCAGGAGGCGCTCGACAGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCCCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGCAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCTGATGGGTGTTACGCCAGGATGATTCAATTACAAAGATTCACACATAGCCAAGTCATTGGTATGACATCTGGTTCAACTTCCTCAGCAAGAACTAGAGAGGATGAGGTGAGAGATAGCTAG 4080 46.35 MSQYSEEIKTTEQWKWSEMQGLELLSSHPLPPPDPFITNNPTPENTDPEHLRPTQEPQDGVGRAKNREMESTTDSKKENGGGGGTSGEKPEAVTAIGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFAYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVALIERFYDPISGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPEADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAILKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVKLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDEPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFKDLNLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFSASIYENIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEVRDS* 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26022703 26028635 + Chy4G087610.1 Chy04g02043 225942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02043 1359 ProSitePatterns ABC transporters family signature. 1231 1245 IPR017871 GO:0005524
Chy04g02043 1359 Pfam ABC transporter transmembrane region 115 387 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g02043 1359 Pfam ABC transporter transmembrane region 771 1039 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g02043 1359 Pfam ABC transporter 1111 1259 IPR003439 GO:0005524
Chy04g02043 1359 ProSitePatterns ABC transporters family signature. 576 590 IPR017871 GO:0005524
Chy04g02043 1359 Gene3D - 435 700 IPR027417 -
Chy04g02043 1359 SUPERFAMILY ABC transporter transmembrane region 101 415 IPR036640 GO:0005524|GO:0016021
Chy04g02043 1359 SMART AAA_5 464 650 IPR003593 -
Chy04g02043 1359 SMART AAA_5 1119 1311 IPR003593 -
Chy04g02043 1359 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 113 1335 - -
Chy04g02043 1359 CDD ABC_MTABC3_MDL1_MDL2 1092 1331 - -
Chy04g02043 1359 CDD ABC_MTABC3_MDL1_MDL2 437 676 - -
Chy04g02043 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 769 1056 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g02043 1359 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 113 1335 IPR039421 -
Chy04g02043 1359 SUPERFAMILY ABC transporter transmembrane region 756 1079 IPR036640 GO:0005524|GO:0016021
Chy04g02043 1359 MobiDBLite consensus disorder prediction 49 75 - -
Chy04g02043 1359 CDD ABC_6TM_Pgp_ABCB1_D2_like 759 1074 - -
Chy04g02043 1359 Pfam ABC transporter 455 604 IPR003439 GO:0005524
Chy04g02043 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1083 1331 IPR027417 -
Chy04g02043 1359 MobiDBLite consensus disorder prediction 24 90 - -
Chy04g02043 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 676 IPR027417 -
Chy04g02043 1359 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 114 402 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g02043 1359 Gene3D ABC transporter type 1, transmembrane domain 160 1065 IPR036640 GO:0005524|GO:0016021
Chy04g02043 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1092 1328 IPR003439 GO:0005524
Chy04g02043 1359 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 673 IPR003439 GO:0005524
Chy04g02043 1359 CDD ABC_6TM_Pgp_ABCB1_D1_like 113 400 - -
Chy04g02043 1359 Gene3D - 1083 1338 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02148 Chy-Chr1:26130610 Chy04g02043 Chy-Chr4:26022703 0 dispersed
Chy04g00404 Chy-Chr4:3600082 Chy04g02043 Chy-Chr4:26022703 4.08E-108 dispersed
Chy04g01921 Chy-Chr4:25185946 Chy04g02043 Chy-Chr4:26022703 5.25E-55 dispersed
Chy04g02043 Chy-Chr4:26022703 Chy09g00260 Chy-Chr9:2136109 0 dispersed
Chy09g00754 Chy-Chr9:9993908 Chy04g02043 Chy-Chr4:26022703 7.46E-83 dispersed
Chy10g00827 Chy-Chr10:14217446 Chy04g02043 Chy-Chr4:26022703 5.89E-101 dispersed
Chy11g00030 Chy-Chr11:384653 Chy04g02043 Chy-Chr4:26022703 1.28E-14 dispersed
Chy04g02043 Chy-Chr4:26022703 Chy04g02045 Chy-Chr4:26039706 3.92E-120 proximal
Chy04g02043 Chy-Chr4:26022703 Chy04g02044 Chy-Chr4:26035811 3.63E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02043 K05658 - csv:101220974 2498.0