Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02044 ATGTCACAATATTCTGAAGAGATAAAGACGACGGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCCTCTCTTCTCATCCTCTTCCTCCTTCTGACCCATTTATCACCAACAATCCAACAGCGGAAAACACTGACCCTGAAGACCTCAGACCCACACAAGAGCCTCAAGACGGAGTTGGCAGAGCTAAAAACAGAGAAATGGAGTCTACCACTGATTCCAAGAAGGAAAACGGCGGTGGCACTAGTGGGGAGAAGCCTGAGGCTGTTACCGCCATTGGGTTTGGGGAGCTTTTCAGATTCGCTGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCCGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGTTTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCTTCATCTTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCGGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTGCGAACATCCGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTCGTGTCCGGGTTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCCGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCCGGGAATATTGTCGAACAGACAATAGTTCAAATTCGGGTTGTTTTTGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAGAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATCGGATTGGGCGCGACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTTCTCTGGTACGGAGGTTATCTTGTCAGACACCACGCCACCAATGGTGGACTGGCCATAGCCACTATGTTTGCAGTGATGATTGGTGGACTGGCACTGGGACAATCTGCTCCGAGCATGAGCTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATTGACCATAAGCCCACTCTAAACCGCAACAATGAATCTGGTTTGAAATTAGAATCAGTTTCAGGACTGGTTGAGCTGAAGAATCTTGATTTCACATACCCATCAAGGCCAGATGTAAGAATCCTCAATAATTTCTCCCTAACTGTCCCTGCTGGAAAAACTATAGCTCTGGTCGGAAGCAGCGGCTCCGGAAAGAGCACAGTTGTTGCCCTAATTGAAAGATTCTATGACCCCATTTCAGGTGAAGTTCTACTAGACGGACATGACATAAAAACTTTGAAGCTGAGATGGTTAAGACAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAAGAGAATATTCTCTTAGGCAGACCTGAAGCCGATCAACTTGAGGTAGAGGAAGCAGCTCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACTCAGGTAGGTGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATCGCAATAGCAAGGGCAATGCTTAAAAACCCTGCAATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAAGAAGCTCTTGATCGTTTTATGATAGGGCGTACCACTCTTGTCATTGCCCATCGACTCTCTACCATTCGGAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACGCATGATGAGCTATTTGCTAAAGGAGAAAATGGTGTATATGCTAAGCTTATCCGGATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCAAGAAAAAGTAGTGCAAGGTAG 2076 46.92 MSQYSEEIKTTEQWKWSEMQGLELLSSHPLPPSDPFITNNPTAENTDPEDLRPTQEPQDGVGRAKNREMESTTDSKKENGGGTSGEKPEAVTAIGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGIGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLKLESVSGLVELKNLDFTYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVALIERFYDPISGEVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPEADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSAR* 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26035811 26039651 + Chy4G087620.1 Chy04g02044 225943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02044 691 Gene3D ABC transporter type 1, transmembrane domain 98 684 IPR036640 GO:0005524|GO:0016021
Chy04g02044 691 MobiDBLite consensus disorder prediction 49 83 - -
Chy04g02044 691 CDD ABC_MTABC3_MDL1_MDL2 435 674 - -
Chy04g02044 691 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 435 671 IPR003439 GO:0005524
Chy04g02044 691 MobiDBLite consensus disorder prediction 25 89 - -
Chy04g02044 691 CDD ABC_6TM_Pgp_ABCB1_D1_like 111 398 - -
Chy04g02044 691 Pfam ABC transporter transmembrane region 113 385 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g02044 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 674 IPR027417 -
Chy04g02044 691 ProSitePatterns ABC transporters family signature. 574 588 IPR017871 GO:0005524
Chy04g02044 691 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 111 691 - -
Chy04g02044 691 Pfam ABC transporter 453 602 IPR003439 GO:0005524
Chy04g02044 691 SUPERFAMILY ABC transporter transmembrane region 99 413 IPR036640 GO:0005524|GO:0016021
Chy04g02044 691 SMART AAA_5 462 648 IPR003593 -
Chy04g02044 691 Gene3D - 425 675 IPR027417 -
Chy04g02044 691 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 111 691 IPR039421 -
Chy04g02044 691 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 112 400 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02044 Chy-Chr4:26035811 Chy09g00260 Chy-Chr9:2136109 1.95E-127 dispersed
Chy04g02043 Chy-Chr4:26022703 Chy04g02044 Chy-Chr4:26035811 3.63E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02044 K05658 - csv:101215102 1306.97