Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02045 ATGAACTATGATTTCAGGCCTTCAAGTGCCAGGAACTCGGTGAGCTCCCCAATCATTGCACGGAATTCTTCCTATGGACGATCACCATATTCACGTCGATTATCTGACTTCTCCACATCTGATTTCAGTCTTTCTCTTGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTGGCCTTTAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCCGAATGGCTTTATGCACTGCTTGGTTCTATAGGCTCTGTTGTTTGTGGGTTTTTAAGCGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAGTACTGCTACTTGTTAATCGGACTATCATCGGCTGCTCTTCTCTTCAATACAATGCAGCATTTCTTCTGGGATATTGTAGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAATACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTGGATGCTAACAACGTCAGATCAGCCATTGGAGACAGGATTTCAGTGATTGTACAGAACACGTCACTCATGCTAGTTGCTTGCACCGCTGGGTTTGTTTTGCAGTGGCGCCTATCTCTTGTCCTTGTAGCTGTCTTTCCCGTGGTTGTTGCTGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTCTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAGCTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCGGCATTCAACTCGGAAGAGAAGATTGTCAGACTTTTTTCAACCAATCTCGAGATACCACTACGTCGCTGCTTTTGGAAGGGACAAATTGCTGGTAGTGGGTTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCCTGGCTTGTGAAGCATGGGCTCTCTGATTTTTCGAAGGCAATTCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCCGAAACACTCACTCTAGCTCCTGACTTTATCAAGGGTGGTCGAGCCATGCGTTCCGTATTTGCACTTCTTGACCGTAAAACTGAAATTGAACCCGATGAATCAAACGTCACCCAAGTCCCAGATAAACTTCGTGGAGAAGTTGAATTAAAACATATTGACTTTTCCTACCCAACTCGTCCTGATATCCTTGTCTTTAGAGACCTTAATTTGCGTGTCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCGCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCGACATCCGGACGAGTTATGATTGATGGAAAGGATATTCGCAAGTTCAATCTCAAGTCCCTGAGAAAGCACATTGCAATGGTCCCTCAAGAGCCGTGCTTGTTTGCTGCTTCCATATATGATAATATAGCTTATGGCCATGAATCGGCAACTGAAGCCGAGATCATTGAAGCCGCTACTTTGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAGACTTTTGTTGGGGAGAGAGGAGTTCAACTATCAGGTGGACAGAAACAAAGAATTGCAATTGCCCGTGCATTGATCAGGAAGGCAGAGCTTATGCTATTAGACGAGGCAACAAGTGCACTCGATGCCGAGTCAGAGCGATCAGTTCAGGAGGCACTCGACCGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCCCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGCAAAGTTTCAGAACAGGGATCACACTCGCATTTGTTGAAAAATTACCCTGATGGGTGTTACGCCAGGATGATTCAATTACAAAGATTCACACACAGTCAAGTCATTGGTATGACATCAGGTTCAACTTCCTCAGCAAGAACTATAGAGGATGAGAAGAGAGATAGCTAG 2019 44.92 MNYDFRPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTMQHFFWDIVGENLTKRVREKMLTAILKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDESNVTQVPDKLRGEVELKHIDFSYPTRPDILVFRDLNLRVRAGKTLALVGASGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTIEDEKRDS* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26039706 26041724 + Chy4G087630.1 Chy04g02045 225944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02045 672 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 10 648 - -
Chy04g02045 672 ProSitePatterns ABC transporters family signature. 544 558 IPR017871 GO:0005524
Chy04g02045 672 Gene3D ABC transporter type 1, transmembrane domain 61 370 IPR036640 GO:0005524|GO:0016021
Chy04g02045 672 CDD ABC_6TM_Pgp_ABCB1_D2_like 72 387 - -
Chy04g02045 672 SUPERFAMILY ABC transporter transmembrane region 69 389 IPR036640 GO:0005524|GO:0016021
Chy04g02045 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 644 IPR027417 -
Chy04g02045 672 CDD ABC_MTABC3_MDL1_MDL2 405 644 - -
Chy04g02045 672 Pfam ABC transporter transmembrane region 84 352 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g02045 672 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 648 IPR039421 -
Chy04g02045 672 Gene3D ABC transporter type 1, transmembrane domain 371 648 IPR036640 GO:0005524|GO:0016021
Chy04g02045 672 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 405 641 IPR003439 GO:0005524
Chy04g02045 672 SMART AAA_5 432 624 IPR003593 -
Chy04g02045 672 Pfam ABC transporter 424 572 IPR003439 GO:0005524
Chy04g02045 672 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 82 369 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Chy04g02045 672 Gene3D - 395 645 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02045 Chy-Chr4:26039706 Chy09g00260 Chy-Chr9:2136109 1.69E-119 dispersed
Chy11g01062 Chy-Chr11:15137070 Chy04g02045 Chy-Chr4:26039706 3.33E-14 dispersed
Chy04g02043 Chy-Chr4:26022703 Chy04g02045 Chy-Chr4:26039706 3.92E-120 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02045 K05658 - csv:101215102 1225.69