Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02069 ATGGCGACCAGCGACATCGAAGTCGGAGGCCGGGGGGCGGCGTCGAGGAAAGACTATTTCGATCCGCTTCCGGCGCCGATGATCGACATGGAGGAGTTAGGGAAATGGTCGTTTTACAGAGCTATCATCGCTGAGTTTGTGGCGACTTTGTTGTTTCTGTACGTCGCCGTTTTGACGGTGATCGGAAATAATAGCCAGATGGACCCGATCAACGGCGGGAATGTATGCGCCGGAGTTGGCCCCGTCGGAATCTCGTGGGTTTTCGGGGGTATGATCTTCGTTCTCGTCTACTGCACCGCCGGTATCTCTGGAGGGCACATAAATCCAGCAGTGACATTCGGAATGTTTTTAACAAGAAAGATATCGTTGGTCCGAGCCTTTCTCTACATCATAGCTCAGTGCATAGGGGCCCTGTGCGGGTGCGCCTTAGTCAAGACATTGCAGCGAGATCGTTACAACCACTATGGCGGTGGCGCTAACCAGCTCGTTGATGGTTATAGCCGAGGCACTGGCCTTGCTGTTGAGATTATGGGCACCTTTATTCTTCTGTATACAGTCTTCTCCGCCACTGATCCCAAACGCAATGCTAGAGATTCCCACGTTCCTGTCTTGGCTCCACTCCCCATTGGCTTTGCTGTCTTCATTGTTCACCTCGCCACCATTCCCGTCACCGGCACTGGCATTAACCCTGCTCGAAGCTTCGGTCCTGCCGTCATCATCAACAATCATAAAGTTTGGAAAGATCATTGGATTTTTTGGGTTGGGCCACTAATTGGATCAACAATTGCTGCAATGTATTATCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTTAGAAGCTCACCGCCAACTCGCTATTAA 873 51.09 MATSDIEVGGRGAASRKDYFDPLPAPMIDMEELGKWSFYRAIIAEFVATLLFLYVAVLTVIGNNSQMDPINGGNVCAGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFLTRKISLVRAFLYIIAQCIGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIMGTFILLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPVTGTGINPARSFGPAVIINNHKVWKDHWIFWVGPLIGSTIAAMYYQYVLRASAVKAIGSFRSSPPTRY* 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26182920 26184377 + Chy4G087870.1 Chy04g02069 225968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02069 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Chy04g02069 290 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 285 IPR034294 -
Chy04g02069 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Chy04g02069 290 PANTHER AQUAPORIN PIP2-4-RELATED 8 285 - -
Chy04g02069 290 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 Pfam Major intrinsic protein 33 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy04g02069 290 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g02069 Chy08g00831 CCT
Chy04g02069 Chy08g00831 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02069 Chy-Chr4:26182920 Chy08g00833 Chy-Chr8:15840346 6.29E-159 dispersed
Chy08g00518 Chy-Chr8:12405477 Chy04g02069 Chy-Chr4:26182920 3.24E-13 transposed
Chy11g00301 Chy-Chr11:2752983 Chy04g02069 Chy-Chr4:26182920 5.76E-20 transposed
Chy10g01323 Chy-Chr10:17592391 Chy04g02069 Chy-Chr4:26182920 2.23E-151 wgd
Chy11g00808 Chy-Chr11:11587712 Chy04g02069 Chy-Chr4:26182920 4.80E-149 wgd
Chy04g02069 Chy-Chr4:26182920 Chy08g00828 Chy-Chr8:15814032 2.75E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02069 K09872 - csv:101214142 584.334