Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02071 ATGGGTAACATTGGCAGTTCCGGTTCCAATGCCCGTAGAAGACACGGTACTCGCCGGAATCACCCTACTCCCCCACCGCCTCCACCACCCCAACCCGAAATTACAAGTAATCGATACGTTTTCGCTGCCGCTACGCCTTACCCAACTCAATACCCCAACCATCCCAATCATCCCCCGCCGTATTACCAGTATCCTGGCTACTTTCCACCGCCACCTGGTCCACCGCCGTCCATGCCGATGCCTTTACCGGCGCCTTACGATCATCACCATCGTGGAGGTCATCCCCAGATGGATCCTGCTCATTGGGTCGGTGGGAGATACCCTTATGGCCCTCCTATGCCGCCTCAAACGCCCTATGTAGAGCATCAGAAGGCGGTTACTATACGGAATGATGTTAATCTCAAGAAGGAAACTCTTAAGGTTGAACCTGATGAAGAAAATCCGGGGCAATTCCTTGTATCGTTCACGTTCGATGCCACCGTTGCTGGGAGTATCACCATCTTCTTCTTTGCGAAAGAAGGTGAAGATTGTAACTTGACCCCTGTAAAAGAAGACATTTTTCAACCAGTAACCGTTCATTTCGAGCAAGGGCTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATAGATTTCTCAAAGTTTGAAGAGTCTGAGTTTCTGAAAGTGAATGACACCGATGTCTATCCATTAGTCGTAAAAGCTGAAGCATCCACAGACACCCAAACTGGCCCAGATGGTACCCCGGTACCTGATCCCATGAATTCTCAGATAACACAAGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTAAGAGTGTTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTACAGGAGATATATGGCATTGGCAATTCAGTTGAGGGCGATGTTGATGGAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAGCCACGGGACACGACTGTCCTTCCCTGCCGACACATGTGTATGTGTAGTGGTTGTGCTAAGGTACTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCTGTGGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGAAAGTTAA 1107 48.51 MGNIGSSGSNARRRHGTRRNHPTPPPPPPPQPEITSNRYVFAAATPYPTQYPNHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRGGHPQMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLKVEPDEENPGQFLVSFTFDATVAGSITIFFFAKEGEDCNLTPVKEDIFQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESEFLKVNDTDVYPLVVKAEASTDTQTGPDGTPVPDPMNSQITQAVFEKDKGEYQVRVLKQILWVNGMRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEES* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26192073 26194756 + Chy4G087890.1 Chy04g02071 225970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02071 368 MobiDBLite consensus disorder prediction 1 56 - -
Chy04g02071 368 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 367 - -
Chy04g02071 368 SMART ring_2 311 349 IPR001841 -
Chy04g02071 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 360 IPR013083 -
Chy04g02071 368 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Chy04g02071 368 PANTHER MAHOGUNIN 1 367 IPR045194 GO:0061630
Chy04g02071 368 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 310 350 IPR045195 -
Chy04g02071 368 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
Chy04g02071 368 SUPERFAMILY RING/U-box 310 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02071 Chy-Chr4:26192073 Chy06g00616 Chy-Chr6:4183984 1.05E-88 dispersed
Chy04g02071 Chy-Chr4:26192073 Chy01g00750 Chy-Chr1:5556542 2.60E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02071 - - csv:101216150 638.262