Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02074 ATGTCAACTAATCCTTTTTCTCTTCTCTCTTCTACTACCACGTCCTTCCCTCACCAACAAGATGCCAACCCTAACCCTAACCCTAAACCGAAACCCTCCGCTGCTGCTGCCAAGAAGAAGAGAAACCTCCCAGGAACCCCGGATCCTGATGCGGAGGTTATCGCTTTGTCACCGAAGTCGCTCATGGCGACGAATAGATTCATATGTGAAATTTGTAACAAGGGGTTTCAGAGAGACCAGAATCTGCAGCTTCATCGACGAGGGCATAACTTACCGTGGAAGTTGCGACAACGGACGAACAAGGAACCGATTAAGAAGAAGGTGTATATTTGTCCAGAAAAGACATGTGTCCACCATGATCCGTCGCGAGCTCTCGGAGACCTCACCGGAATAAAGAAGCATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACTCTTTTTTCCAGGAAAGATAGCTTTATAACTCATAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCTACAAATATTCTCAATAATCTAAGAAATGATTCAAATAATATCAATCTTCTTCATCAACAGGCTGATCATCATCAATCTTTGATTGATCATCATCAATCTCTTGGAGATATTTCTGGACTTTCCCAATTCACTAATCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAAAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCATCTGCTGAAAATGCAATCAACAACAACAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTCGGATCGATAACCGAAAACGGGCTTTCGATGTTGCCAGTGATGGATAAAGAAGATGTTGAGAATAAGGGAAGTAATAATAATTTTTCTAAAGCTACATCATCGTCGGCAGCTGCGCTGTTGTCGGGTCAGTCTTCTCAGTCTGTTGTTTCTTCTTCTCCGATGTCGGCCACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCGGCAATAATAATAATACCCCGCTCTTTGGTTCGGGTGCTTTCGGAGTCATGAGTTCTTCGTCGTCGTTGTCCTCATCGTCGTCTTCCAATGCAGTAAGCAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGATAATGGCTGACTCGGTTCAGATGATCGGTAGCAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATTCCACCAAGCGGTAACAACGCTATGAGAAGTAGTGGACAAACGAGGGACTTCCTTGGAGTTGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCACCAGAGCTAGCAAAATTCACCACCATAAACTCAACAATGGGACTAAGCCAATTTGCCGCCAACCACTAA 1497 43.09 MSTNPFSLLSSTTTSFPHQQDANPNPNPKPKPSAAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNNINLLHQQADHHQSLIDHHQSLGDISGLSQFTNHSDHFLRDFEDHQQKNRSPLSLWLNQASAENAINNNNISNFFGASSSSSNLFGSITENGLSMLPVMDKEDVENKGSNNNFSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSGNNNNTPLFGSGAFGVMSSSSSLSSSSSSNAVSSLNSLNKSRSLIMADSVQMIGSNSDLSSNCLSQLLIPPSGNNAMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFTTINSTMGLSQFAANH* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26207043 26209261 - Chy4G087920.1 Chy04g02074 225973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02074 498 MobiDBLite consensus disorder prediction 1 51 - -
Chy04g02074 498 Gene3D Classic Zinc Finger 46 118 - -
Chy04g02074 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Chy04g02074 498 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Chy04g02074 498 MobiDBLite consensus disorder prediction 1 22 - -
Chy04g02074 498 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 1 417 - -
Chy04g02074 498 Gene3D Classic Zinc Finger 119 201 - -
Chy04g02074 498 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Chy04g02074 498 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Chy04g02074 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 417 - -
Chy04g02074 498 SMART c2h2final6 144 164 IPR013087 -
Chy04g02074 498 SMART c2h2final6 109 139 IPR013087 -
Chy04g02074 498 SMART c2h2final6 67 89 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02074 Chy-Chr4:26207043 Chy11g00664 Chy-Chr11:8175368 2.19E-115 dispersed
Chy10g00017 Chy-Chr10:579188 Chy04g02074 Chy-Chr4:26207043 1.16E-96 transposed
Chy04g02074 Chy-Chr4:26207043 Chy08g00823 Chy-Chr8:15781028 1.09E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17940 PF12171 zf-C2H2_jaz 7.30E-05 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02074 K25870 - csv:101213422 833.172