Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02075 ATGAGCGTGATCGACCTTTTGACCAGAGTAGATGCGATCTGCCAGAAGTACGACAAATATGACATAGAAAAGCAGAGAGATCTCAATGTCTCCGGCGACGATGCCTTCGCTCGTCTCTACGCCACTGTTGAAGCTGACATTGAAGCTGCTCTACAGAAAGCGGAGGATGCTTCTAAAGAGAAGAATAGGGCATCCGTTGTGGCATTGAATGCAGAGATTCGTCGTACAAAAGCTCGTTTACTGGAGGAAGTTCCCAAGTTGCAAAGGTTGGCTGTTAAGAGGGTTAAAGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTACCGGATAGAATTCAAGCTATACCAGATGGAACTGTGACTACCACGAAGAATAATGGGGGCTGGACATCCTCAGCTTCACGGACTGAAATCAAATTTGACTCAGATGGGCGGTTTGATGATGAGTACTTCCAACACACCGAGCAGTCCAGTCAGTTCAGGCAGGAGTATGAAATGAGGAAAATGAAGCAGGATCAAGGATTGGACATGATATCAGAAGGGTTGGATACTCTGAAGAATATGGCACATGATATGAATGAGGAAATAGACAGGCAAGTCCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTTAGATTAAAGGACACAGTTAACCAGCCGATGATCGATGAATGTCGTTGCCATGTAAGGTCATCCTTCCCTAATGGATTGTATACAACCATTGCTTTTGTTTATGATATCAATTTGGACATGCATCTCAAAGTTGATCATAATCAAAACTTTGATCAGACGGGTAGTCCTTTTGGCTTCTCTCTACTGCCCATTATAGCCCGGGAGAAAATGGAGATGAGGAATGAGGATTGA 912 44.19 MSVIDLLTRVDAICQKYDKYDIEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTVTTTKNNGGWTSSASRTEIKFDSDGRFDDEYFQHTEQSSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQPMIDECRCHVRSSFPNGLYTTIAFVYDINLDMHLKVDHNQNFDQTGSPFGFSLLPIIAREKMEMRNED* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26217224 26220965 - Chy4G087930.1 Chy04g02075 225974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02075 303 CDD SNARE_Qc 175 230 - -
Chy04g02075 303 Gene3D - 170 231 - -
Chy04g02075 303 SMART tSNARE_6 165 232 IPR000727 -
Chy04g02075 303 PANTHER SYNTAXIN 1 233 IPR045242 -
Chy04g02075 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Chy04g02075 303 Coils Coil 40 60 - -
Chy04g02075 303 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Chy04g02075 303 PANTHER SYNTAXIN-73 1 233 - -
Chy04g02075 303 SUPERFAMILY SNARE fusion complex 165 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00793 Chy-Chr4:10202039 Chy04g02075 Chy-Chr4:26217224 6.95E-172 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02075 K08506 - csv:101215905 459.144