Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02078 ATGGATCAAACAATTCTCCCCTCCTCCTCGTCGTCGTCCTGCCACAACATCTCCCTCGTCTCACAGTCTTGTGATGCATCACTTTTGTTGGAGACGGTGGTGGGAGTGGAATCAGAGAAAGATTCAAGCAGAAGTTTTGGAATGAGAAATTTCAAATATGTAAATAAGATCAAAGCAGCTGTTGAAAAAGAGTGCCCTCTCACTGTTTCTTGTGCTGACATCGTTGCTCTCTCTGCTAGAGATGGCATAGTTATGTTAAAAGGGCCTCGTATAGATTTGAAAACGGGGAGAAAAGACAGCAAAATGAGTTATTCAACTATGGTTGAGGAGTTGGTTCCACAACACAATGCATCTCTTGTAAATGTTCTCTCTCGCTTTAACTCCATTGGTATTGATACTGAAGCAACAGTCGCCCTTTTAGGAGCCCACTCAGTCGGTCGAGTTCACTGCGTAAACTTAGTCGAAAGACTATATCCAACGGTCGATCCCACCATCGATCCAGAATATGCCAAATACCTTAAGATGCGATGTCCAACACCAAATCCTGATCCAAACGGAGTATTGTATTCAAGAAACGATCGTGAAACTACGATGATTCTCGATAACATAGATGGGTTTGAAGAACAGAGTTTGATATCGATGATGTTGAATTTCTCTTCAATATTCTCATCAATTACCTTCACATTACTTCTATTTTCCATTTCCAATACTGTCATTGTCGATTTCACTGCCACCGTCGCCGCCGCCGTCGAATTTGACTTCGGCACTGTTGAACTCAGTAGTTTAAAGCTACTCGGCGATGCCCACTTGAACAACGGGAGCGTGAGGCTAACTCGGGACCTCGCGGTCCCAAATTCAGGCTCCGGCAGAGTCCTTTACGCTAAACCCATCAGATTCCGGCAGCCGGGGATTAATTACCTCGCTAGTTTCTCCACATTTTTCTCCTTCTCTATTACTAATCTCAACCCGTCGTCGATCGGCGGTGGTTTGGCGTTTGTTATATCCCCGGACCCTGAAACGCTCGGCGGCGCTGGTGGGTTGTTGGGGTTGGCTGACGAGAGGGGATTGGGATTCGTGGCGGTGGAATTCGATACATTAATGGACGTGGAATTTAAGGACATTAATGGAAACCATGTGGGATTGGATCTGAACGAAATGGTTTCGTTAGAGGTTGAAGATCTTCAGGGAATTGGAGTCGATCTTAAAAGCGGCGATACGGTGAATGCGTGGATTAAATACGACGGGTGGGCTCGGATCTTCGAAGTATTTGTTTCTTATTCGAATTTGAAACCGACAGAACCTCTAATGTCGTTCAATCTCGACCTTGATCCATATTTGAACGATTTTATGTACGTTGGATTTTCCGGTTCGACACAGGGGAGTACTGAAGTTCACAGTATGGACTGGTGGAGCTTTGCGTCGTCGTTTGACTCGGATTCATCACCTGGGTCGGTTCCGCCGCCGCCAACGACGACGCTGATGAACCCAACGGCGAATGTCGTTCGTTCACCGCCACCGTCGCAACCGCCATCCGGTTCAGATTCCGTCACGCAAAAGAACTCCAAGTCCACGTCCTGCCACAATGGGCTCTGCAAACAAGGCGCTGGCGCGGTGGTCGGTGTTGTGACGGCGGGGGCATTTGTTCTAGCATTATTCGCCGGCGCGTTAATTTGGTCGGTTAGGTTTTGTATTGGAGGAATGGGCCTAGATATCATTGGGTTTTTTCTCAAGCCCAATATGGGAAACTTGGGCCTATTGCGAAGTATCGCAAACCCTCTCTACATTACGCTCTAA 1794 47.1 MDQTILPSSSSSSCHNISLVSQSCDASLLLETVVGVESEKDSSRSFGMRNFKYVNKIKAAVEKECPLTVSCADIVALSARDGIVMLKGPRIDLKTGRKDSKMSYSTMVEELVPQHNASLVNVLSRFNSIGIDTEATVALLGAHSVGRVHCVNLVERLYPTVDPTIDPEYAKYLKMRCPTPNPDPNGVLYSRNDRETTMILDNIDGFEEQSLISMMLNFSSIFSSITFTLLLFSISNTVIVDFTATVAAAVEFDFGTVELSSLKLLGDAHLNNGSVRLTRDLAVPNSGSGRVLYAKPIRFRQPGINYLASFSTFFSFSITNLNPSSIGGGLAFVISPDPETLGGAGGLLGLADERGLGFVAVEFDTLMDVEFKDINGNHVGLDLNEMVSLEVEDLQGIGVDLKSGDTVNAWIKYDGWARIFEVFVSYSNLKPTEPLMSFNLDLDPYLNDFMYVGFSGSTQGSTEVHSMDWWSFASSFDSDSSPGSVPPPPTTTLMNPTANVVRSPPPSQPPSGSDSVTQKNSKSTSCHNGLCKQGAGAVVGVVTAGAFVLALFAGALIWSVRFCIGGMGLDIIGFFLKPNMGNLGLLRSIANPLYITL* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26222264 26240470 + Chy4G087960.1 Chy04g02078 225977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02078 597 Gene3D Peroxidase, domain 2 114 202 - -
Chy04g02078 597 Gene3D - 247 484 - -
Chy04g02078 597 PRINTS Haem peroxidase superfamily signature 69 86 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 PRINTS Haem peroxidase superfamily signature 87 99 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 PRINTS Haem peroxidase superfamily signature 135 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 SUPERFAMILY Concanavalin A-like lectins/glucanases 248 487 IPR013320 -
Chy04g02078 597 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 235 559 - -
Chy04g02078 597 Gene3D - 21 113 - -
Chy04g02078 597 Pfam Legume lectin domain 251 479 IPR001220 GO:0030246
Chy04g02078 597 CDD lectin_legume_LecRK_Arcelin_ConA 250 470 IPR001220 GO:0030246
Chy04g02078 597 ProSitePatterns Legume lectins beta-chain signature. 359 365 IPR019825 -
Chy04g02078 597 PANTHER - 235 559 - -
Chy04g02078 597 MobiDBLite consensus disorder prediction 480 521 - -
Chy04g02078 597 ProSiteProfiles Plant heme peroxidase family profile. 22 276 IPR002016 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 SUPERFAMILY Heme-dependent peroxidases 22 189 IPR010255 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 PRINTS Plant peroxidase signature 49 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 PRINTS Plant peroxidase signature 87 102 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 PRINTS Plant peroxidase signature 68 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 PRINTS Plant peroxidase signature 134 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 PRINTS Plant peroxidase signature 10 30 IPR000823 GO:0004601|GO:0006979|GO:0020037
Chy04g02078 597 Pfam Peroxidase 21 189 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02078 Chy-Chr4:26222264 Chy12g01063 Chy-Chr12:15779580 6.91E-70 dispersed
Chy04g02078 Chy-Chr4:26222264 Chy07g01260 Chy-Chr7:17305002 7.64E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02078 - - csv:101215187 558.525