Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02095 ATGGACGCTAAGCTTTTGCTTCTGCTTCTTCTCTTTCTTTTCGACGTCTCCTTTGCTCAGATGCCAGGCATTTACTCCAATCTCTGTTATTCTCGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTTGAGTGGGATCCAGATACCCAAGTTCGTTTTGGAGAAGCAGTTAACATTTCTGTTGCAAATGAAACGAGGAAGCAATATATGACGTTAAGACACTTCCCTGCTGATTCCAGGAAGTACTGTTACTCACTTAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATACGGTAATTTTGACAACAACAATGTGTATCCAAAATTTGACATTTCCCTCGGGGCAACTCACTGGTCAACAATTGTCATATCTGACGCCAACACTATCGAGGTTCGAGAACTCATATTTCTGGCTTCAACTCCTACTGTAAGCGTATGTTTGTCAAATGCTACTACTGGGCAGCCATTCATATCCACGCTCGAGCTTCGGCAGTTTAACGGTTCTGCCTATTACACTCAATTTGAAGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGAGCAGATTCGGAAGCTCCAGTAAGGTATCCTGATGATCCTTTTGACCGGATGTGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAGTTTCCACTAAATTACCAATAGATGTGGATAGAGATGAAAGACCACCTCAAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAACTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCAACTGATACAAGAAAATTCAGGCTTGTACTTCCTGGAATGCCTGAAATCAGCAAAGCTGTAGTCAATATTGAGGAAAATGCTCAAGGAAAATATCGACTTTATGAGCCTGGTTTCACCAACATAACCTTACCGTTTGTTTTATCTTTTCGGTTTGGTAAAACACAAGATTCTTCATTAGGACCTCTGTTAAACGCTATGGAGATTAACAGGTATCTAGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTTCCATCATCAGATTGGGATGAAGGTGGCGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACAGCCAAGAATAATTAAAATTTCATTGTCCAAACAGAATTTGTCGGGGAACATACCTACAGACATTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCCGATTTTACTGGATGCATGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGTTGCCTTCCTCTTTAGCAAGTCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGCTATCTGGAACAGTGCCCTCTGGTCTTCTCAGTAAAAACCTAGTCGTTGACTACTCTGGAAACATTAATCTTCACGAAGCGGGAAAAAAGAACCACGTTTATATCATTGTGGGTTCAGTAATTGGTGCTGTTGTTCTGCTGTTAGCTACTGTGGTATCTTGCTACTTCTTACATAAAGGAAGAAGAAGATATCATGAACAAGGAGATCTACCTGAAGAATCCTTGGCTGTACAAAGATTTGTCTCGTCAAAGGGTGATGCCTCCAAGGAAACCGCACATTGCTTCAGTGTAAATGAAATCGTCCAAGCAACGAAAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTCGGTGTTGTGTACTACGGGAAGTTAAATGATGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTCCAGGGAAGGCGAGAATTTGCAAATGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATCTTGTACAATTTCTGGGATATTGCCAAGAACAAGACAGAAGTATGCTTATCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTAAGCCCACATGTCATTTTTGCAGTAAACAATGCAGGTTCCAAAACCAACTGACTTCTCGTTGGTGTACAGGTCCACTAACACGGGAAAAAACTATCAGTTGGATAAAGCGCCTCGAGATTGCTGAAGATGCTGCAAGAGGGGTTGAGTACCTTCATACAGGCTGTATTCCAGCAATTATTCACAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAAAGCCAAGGTTTCAGATTTTGGTCTTTCGAAGCTTGCAGTGGATGGGGTCTCCCATGTGTCCAGCATCGTTCGGGGGACTGTTGGATATTTGGATCCAGAGTATTACATCTCCCAGCAGTTGACAGACAAGAGTGATGTATATAGCTTTGGCGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAATGTAAACTTTGGTGCTAATTGCCGCAACATTGTCCAATGGGCGAAATTACACATTGAGAGCGGTGACATTCAAGGGATCATCGATCCATCGCTCCGCAATGAATATGACATTCAATCCATGTGGAAAATCGCAGAGAAAGCACTAATGTGTGTACAGGCAAATGGGCACCTGAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAGGATTCAATTCTAATTGAAAGGGAATCAACTGCAACTAAAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCTTTGAATATGGGATCTCTCGATTTGTGTGGAAACGAAAACTATGTGTCGTTTGACGAATCCATTGCTCGGCCTACTGCAAGGGTTTTCGTGAAGATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGTGAGCAGAGTCCGAGGTCTAATGTTCGCGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGTAGGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAGGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACTAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGTGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATTGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACGGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGGGTCAGCTAAGAAAGAAGCTCATCCAACCCCTATTCCTCAGATGGCTCATCAAGGGTCGTTTTCCCAAGGAGTTAATTATGCAAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGCACTGACTAA 3396 41.93 MDAKLLLLLLLFLFDVSFAQMPGIYSNLCYSRFVSLDCGGQESFTDDIGLEWDPDTQVRFGEAVNISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSAYYTQFEDQFYLSVSARINFGADSEAPVRYPDDPFDRMWESDSVRKANYLVDVAAGTEKVSTKLPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPEISKAVVNIEENAQGKYRLYEPGFTNITLPFVLSFRFGKTQDSSLGPLLNAMEINRYLEKSDGSLDGAVVASVISKFPSSDWDEGGDPCMPVPWSWLQCNSDPQPRIIKISLSKQNLSGNIPTDIAKLSGLVELWLDGNSFVGPIPDFTGCMDLKILHLENNQLTGELPSSLASLPNLRELYVQNNMLSGTVPSGLLSKNLVVDYSGNINLHEAGKKNHVYIIVGSVIGAVVLLLATVVSCYFLHKGRRRYHEQGDLPEESLAVQRFVSSKGDASKETAHCFSVNEIVQATKDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANEVTLLSRIHHRNLVQFLGYCQEQDRSMLIYEFMHNGTLKEHLYGKPTCHFCSKQCRFQNQLTSRWCTGPLTREKTISWIKRLEIAEDAARGVEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGANCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQANGHLRPSISEVLKEIQDSILIERESTATKEGNSDDMSRNSVHSLNMGSLDLCGNENYVSFDESIARPTARVFVKMADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDGSAKKEAHPTPIPQMAHQGSFSQGVNYASSQSQAQHLMVPMQGTD* 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26324861 26338645 - Chy4G088130.1 Chy04g02095 225994

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02095 1131 Pfam Malectin-like domain 36 365 IPR024788 -
Chy04g02095 1131 SUPERFAMILY Histone-fold 985 1092 IPR009072 GO:0046982
Chy04g02095 1131 MobiDBLite consensus disorder prediction 1101 1131 - -
Chy04g02095 1131 ProSitePatterns NF-YB/HAP3 subunit signature. 1019 1035 IPR003956 GO:0005634|GO:0006355|GO:0043565
Chy04g02095 1131 MobiDBLite consensus disorder prediction 1075 1090 - -
Chy04g02095 1131 Gene3D Ribonuclease Inhibitor 382 529 IPR032675 -
Chy04g02095 1131 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524
Chy04g02095 1131 CDD STKc_IRAK 609 900 - -
Chy04g02095 1131 PANTHER OS07G0107800 PROTEIN-RELATED 715 940 - -
Chy04g02095 1131 Gene3D Phosphorylase Kinase; domain 1 577 678 - -
Chy04g02095 1131 MobiDBLite consensus disorder prediction 961 985 - -
Chy04g02095 1131 PANTHER TYROSINE KINASE DOMAIN PROTEIN 715 940 - -
Chy04g02095 1131 ProSiteProfiles Protein kinase domain profile. 603 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02095 1131 Gene3D Histone, subunit A 976 1109 IPR009072 GO:0046982
Chy04g02095 1131 PANTHER TYROSINE KINASE DOMAIN PROTEIN 31 691 - -
Chy04g02095 1131 SMART serkin_6 603 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy04g02095 1131 PRINTS CCAAT-binding transcription factor subunit A signature 1016 1034 - -
Chy04g02095 1131 PRINTS CCAAT-binding transcription factor subunit A signature 1035 1053 - -
Chy04g02095 1131 PRINTS CCAAT-binding transcription factor subunit A signature 1054 1072 - -
Chy04g02095 1131 Gene3D Transferase(Phosphotransferase) domain 1 679 926 - -
Chy04g02095 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Chy04g02095 1131 SUPERFAMILY L domain-like 402 509 - -
Chy04g02095 1131 Pfam Protein tyrosine and serine/threonine kinase 605 844 IPR001245 GO:0004672|GO:0006468
Chy04g02095 1131 MobiDBLite consensus disorder prediction 1075 1131 - -
Chy04g02095 1131 SUPERFAMILY Protein kinase-like (PK-like) 590 897 IPR011009 -
Chy04g02095 1131 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 988 1052 IPR003958 -
Chy04g02095 1131 PANTHER OS07G0107800 PROTEIN-RELATED 31 691 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02095 - - - csv:101212456 1814.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00617 Chy-Chr4:7005893 Chy04g02095 Chy-Chr4:26324861 4.52E-08 dispersed
Chy04g00618 Chy-Chr4:7015351 Chy04g02095 Chy-Chr4:26324861 3.75E-15 dispersed
Chy04g02095 Chy-Chr4:26324861 Chy07g00522 Chy-Chr7:4244476 1.51E-81 dispersed
Chy08g01015 Chy-Chr8:17367715 Chy04g02095 Chy-Chr4:26324861 1.28E-27 dispersed
Chy01g01370 Chy-Chr1:18493118 Chy04g02095 Chy-Chr4:26324861 2.57E-121 transposed
Chy01g01662 Chy-Chr1:22570705 Chy04g02095 Chy-Chr4:26324861 9.45E-42 transposed
Chy02g02392 Chy-Chr2:27702604 Chy04g02095 Chy-Chr4:26324861 2.85E-16 transposed
Chy03g00262 Chy-Chr3:2657257 Chy04g02095 Chy-Chr4:26324861 4.68E-65 transposed
Chy06g01888 Chy-Chr6:22731154 Chy04g02095 Chy-Chr4:26324861 3.41E-41 transposed
Chy06g01902 Chy-Chr6:22863372 Chy04g02095 Chy-Chr4:26324861 3.98E-49 transposed
Chy07g01303 Chy-Chr7:17697258 Chy04g02095 Chy-Chr4:26324861 6.00E-52 transposed
Chy10g00814 Chy-Chr10:14115493 Chy04g02095 Chy-Chr4:26324861 0 transposed
Chy11g01856 Chy-Chr11:24810230 Chy04g02095 Chy-Chr4:26324861 3.06E-127 transposed
Chy10g00622 Chy-Chr10:12810053 Chy04g02095 Chy-Chr4:26324861 2.05E-64 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01888 . 34 174 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.3 6.5e-49 191.0
Chy06g01888 . 58 196 CCAAT-HAP3 Transcription Factor Family AT1G21970 67.3 1.3e-49 193.4
Chy07g01303 . 11 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 53.8 9.0e-38 154.1
Chy06g01902 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.2 3.5e-49 191.4
Chy07g01303 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 7.2e-47 183.7
Chy04g02095 . 980 1082 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 3.9e-45 177.9
Chy10g00622 . 25 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 59.3 9.4e-39 156.8
Chy04g02095 . 959 1073 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 2.8e-48 188.3
Chy10g00622 . 1 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 64.6 4.1e-44 174.5
Chy06g01902 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 8.7e-42 166.8
Chy07g01303 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.5e-41 165.2
Chy01g01662 . 44 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 81.3 2.9e-40 161.8
Chy06g01902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.4e-39 159.5
Chy07g01303 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 6.1e-38 154.1
Chy04g02095 . 959 1132 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.6 1.2e-63 239.6
Chy10g00622 . 7 193 CCAAT-HAP3 Transcription Factor Family AT2G37060 61.3 5.7e-50 194.1
Chy07g01303 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.9e-41 164.5
Chy06g01902 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 6.3e-41 164.1
Chy07g01303 . 19 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.4 1.2e-44 176.8
Chy04g02095 . 965 1083 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 5.8e-44 174.5
Chy06g01902 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.1e-41 166.0
Chy06g01902 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 81.5 4.8e-50 194.5
Chy07g01303 . 27 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 6.1e-45 177.6
Chy04g02095 . 969 1087 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.6 5.1e-44 174.5
Chy10g00622 . 14 164 CCAAT-HAP3 Transcription Factor Family AT5G47640 54.8 1.0e-39 160.2
Chy04g02095 . 970 1132 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.4 1.5e-61 232.6
Chy10g00622 . 12 192 CCAAT-HAP3 Transcription Factor Family AT3G53340 61.7 7.6e-50 193.7
Chy06g01902 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.3e-41 166.4
Chy07g01303 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.4e-41 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006798 2 2 1 0 1 1 2 0 0 1 1 0 2 1 1 2 0 0 2 1 1 0 1 0 0 1 1 0 0 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17941 PF12819 Malectin_like 5.60E-76 CL0202 Chy TF
71225 PF12819 Malectin_like 5.60E-76 CL0202 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g02095 Chy_Chr04 FPKM 0.92196 1.261522 2.408732 3.388769 2.950215 2.561624 3.293697 4.276717 4.334464 4.063929