Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02096 ATGCTGGATCTTAACCTCGAAGTTGTTACCTCTGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGACAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCTTCTATCGTTAACGGCGATCTTTCCGCTAGTACCACCGGCGACGAGGACTCTTCTTCTAACGCTGACGAGGCGTTTCCGTTTGCCTTTGGAAAAGACTACGCGGATCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTTGATGACCACCGCGATCAGACGATGGTGCTCTTCCCGTTAACCGGCGGGTTATCTTCTGGTTCGAGTCCGCTGAAAAGGTGGCCGGAGGTTTCTCCGTCGGAATTTGGTTATTGTGGTGGCGCGCCGGACCGGCGAATAACCGCACCGCCAACGCAGCAACAGAGGAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACTTTTTATCGACGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGTAAACAGGTTTATTTGGGTGGCTTCGATACTGCACATGCTGCTGCTAGAGCATATGATCGAGCGGCGATCAAGTTTCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAGGATATTAAGCAGATGAGTAATTTCACCAAGGAGGAGTTTGTTCACATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAGTACAGAGGCGTTACTCTGCATAAATGTGGGCGGTGGGAAGCTCGTATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGTAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGAATGACATAGGAGAGAACAACCAAATTATTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGCCAGAAATGAGAGCATTGGCATGTTTGCTAATGGTATTCATCACAGCTCACAGGACGTGCTTGTTGACAGAAGAGCTATGCCTGTGAACTCTGTTTCAACAGCAATTAGATCATCTCAGCCATATAGCTCTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCGTCTCCAGGGGAAGAGCAACAGAGATGACGATGGGGGTTGGGTCCTGGGAGTGGCAAATCCATGGCCACCCAAGTGGAACAACCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTTTTCTTCTTCATCAACTGCCATTTCATCAGCATCACAAGCTGTTGGTGAAATCCATTTTCCAGCAATCTTCTACTGTAGGAGTTGA 1431 47.45 MLDLNLEVVTSESASDSVEMVTDRFLQFPANRMESAGSFNSSSIVNGDLSASTTGDEDSSSNADEAFPFAFGKDYADQESLTAKSLCVFDDHRDQTMVLFPLTGGLSSGSSPLKRWPEVSPSEFGYCGGAPDRRITAPPTQQQRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASENDIGENNQIIDLNLGIAPPNLSDARNESIGMFANGIHHSSQDVLVDRRAMPVNSVSTAIRSSQPYSSAVPSNYHSSWNVSNSSFFPVSRGRATEMTMGVGSWEWQIHGHPSGTTSVPLFSAAASSGFPSSSSFSSSSTAISSASQAVGEIHFPAIFYCRS* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26347995 26351318 - Chy4G088140.1 Chy04g02096 225995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02096 476 MobiDBLite consensus disorder prediction 127 157 - -
Chy04g02096 476 ProSiteProfiles AP2/ERF domain profile. 156 212 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 SUPERFAMILY DNA-binding domain 247 306 IPR016177 GO:0003677
Chy04g02096 476 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 Gene3D AP2/ERF domain 155 213 IPR036955 GO:0003700|GO:0006355
Chy04g02096 476 Gene3D AP2/ERF domain 247 306 IPR036955 GO:0003700|GO:0006355
Chy04g02096 476 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 460 - -
Chy04g02096 476 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 SMART rav1_2 156 218 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 SUPERFAMILY DNA-binding domain 155 213 IPR016177 GO:0003677
Chy04g02096 476 CDD AP2 155 213 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 460 - -
Chy04g02096 476 Pfam AP2 domain 156 204 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 Pfam AP2 domain 247 296 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Chy04g02096 476 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02096 Chy-Chr4:26347995 Chy11g00229 Chy-Chr11:2147611 3.88E-89 dispersed
Chy10g00619 Chy-Chr10:12785616 Chy04g02096 Chy-Chr4:26347995 2.41E-76 wgd
Chy11g01294 Chy-Chr11:19151202 Chy04g02096 Chy-Chr4:26347995 7.68E-125 wgd
Chy04g02096 Chy-Chr4:26347995 Chy08g00813 Chy-Chr8:15713566 8.09E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17942 PF00847 AP2 1.30E-09 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02096 K09284 - csv:101211242 899.042