Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02107 ATGGTTAAACCCTGCTGGAAGCCTCATGATGATGGTGATTCAAACGGACGAGTGGATGGATTGTTGTGGTCTAAGGATCTGGGGCACCATGTTTATGGACAATTCTCCATGGCAGTAATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGACCAATCCAGGTCCGCTGGGAACCTTTGTCGGAGTCTATGACGGCCATGGCGGAACCGAAGCTTCACGGTTTGTCAACGACAATCTCTTCAGCAATCTCAAAAGATATGCGTCTTTACACCAAGACATATCAGAAAATGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAAGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTAGGGATCATCTGCAATGGACAACTATATATTGCAAATGCAGGCGATTCACGAGTAGTGCTTGGGAGAACTGAGAGAGCCACTAGAGAAGTGATTGCCATTCAATTGTCCACAGAACACAACGCAAGCATAGAGTCTGTGAGAGATGAACTTCGGATGGTTCATCCAGAAGATCCCCAGATTGTGATCCTAAAACACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGTGATGCATATTTGAAAAAAGCAAAGTTCAACAGACCACCTCTCCCCCCTAAATTTCAACTGCCCGAGCCATTTTACAAATCGATCCTCAGTGCAGAACCGTCAATATTAGTACACAAACTCCGCCCAGATGATCAATATCTCATATTTGCTTCTGATGGTCTGTGGGAGCACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCCCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGTAGGCCCTCCCCTTCCTCCTTGTCAATCAAAGGAGGAGAAGGTCTCCCCTCATCGGCAAACTCCTAG 1113 44.74 MVKPCWKPHDDGDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNPGPLGTFVGVYDGHGGTEASRFVNDNLFSNLKRYASLHQDISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKSILSAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPSSLSIKGGEGLPSSANS* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26420099 26421572 - Chy4G088250.1 Chy04g02107 226006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02107 370 CDD PP2Cc 32 342 IPR001932 -
Chy04g02107 370 SUPERFAMILY PP2C-like 32 344 IPR036457 -
Chy04g02107 370 PANTHER ALPHABET, ISOFORM E-RELATED 3 364 - -
Chy04g02107 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 342 IPR001932 -
Chy04g02107 370 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
Chy04g02107 370 Pfam Protein phosphatase 2C 66 311 IPR001932 -
Chy04g02107 370 SMART PP2C_4 12 340 IPR001932 -
Chy04g02107 370 Gene3D - 23 349 IPR036457 -
Chy04g02107 370 PANTHER PROTEIN PHOSPHATASE 2C 67-RELATED 3 364 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01778 Chy-Chr4:24116138 Chy04g02107 Chy-Chr4:26420099 3.74E-138 dispersed
Chy04g02107 Chy-Chr4:26420099 Chy11g00244 Chy-Chr11:2291313 0 dispersed
Chy10g00608 Chy-Chr10:12662172 Chy04g02107 Chy-Chr4:26420099 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02107 K01102 - csv:101210750 719.924