Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g02109 | ATGGCCGCCCTCGCTACCCTCTCTCCGCCGCGTCTCGCCGATCTCTCCCACTCAATTTTCTCCGAGATTCACCAACACCGCCGCCGTCTCACCTTCATTCTCTCTTCCCCAACCCTCTTCTCCCTCACTCTCCGTCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTCGCCCGTTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGTCACCGTCCAAACTAATCCCTTACCACCCTTCCACCGCCGCCATCTCCCCTCAAGACCTCGACGCTGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACCAAATGGCGTGCTACCCTTTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCCGGACTCGCCACCGGCGGGGGCGGGGCTTTGATTCCGTACATTGACACGGTGGTGAGGTGTTGGAAATTCGTGGGGTTTGTTGGTAGTTGCGGAGGGAAGGTTCGGAAAGAGGTGGCGGCGTCACCTATGGCGGTGGTGGAGCTACCGTCAGTGGCGGTGGGTGGTGGGGGTGCGGCGGTGGAATGTGTGATATGTAAAGAGGAGATGGGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTTAGGAAGAGAAACACGTGTCCTTGTTGTAGGTTTCAGCTTCCTACTGATGATGTTTTTGGGGAGATCCAACGGCTATGGGAGATCCTCTTCAAGGTGGGATCCACCATGTGTACATCTGATGGAGATTAA | 822 | 57.06 | MAALATLSPPRLADLSHSIFSEIHQHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQSPSKLIPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGLATGGGGALIPYIDTVVRCWKFVGFVGSCGGKVRKEVAASPMAVVELPSVAVGGGGAAVECVICKEEMGEGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDVFGEIQRLWEILFKVGSTMCTSDGD* | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 26432159 | 26432980 | - | Chy4G088270.1 | Chy04g02109 | 226008 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g02109 | 273 | ProSiteProfiles | Zinc finger RING-type profile. | 200 | 241 | IPR001841 | - | |
| Chy04g02109 | 273 | SUPERFAMILY | RING/U-box | 199 | 247 | - | - | |
| Chy04g02109 | 273 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 270 | - | - | |
| Chy04g02109 | 273 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC | 1 | 270 | - | - | |
| Chy04g02109 | 273 | Pfam | Ring finger domain | 199 | 241 | IPR001841 | - | |
| Chy04g02109 | 273 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 252 | IPR013083 | - | |
| Chy04g02109 | 273 | SMART | ring_2 | 200 | 240 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy04g02109 | Chy-Chr4:26432159 | Chy08g00547 | Chy-Chr8:13019722 | 5.47E-14 | dispersed | |
| Chy04g02109 | Chy-Chr4:26432159 | Chy10g00531 | Chy-Chr10:11884438 | 1.15E-14 | transposed | |
| Chy04g02109 | Chy-Chr4:26432159 | Chy04g02163 | Chy-Chr4:26740824 | 9.56E-15 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g02109 | - | - | csv:101209757 | 490.73 |