Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02117 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATAATTCCATTTCTAGGTATTCGATCTCGTCGCCGTCGAGAACGCCGGCCTTGACTCCACGCCGGAGCTTCAACGATGTCATGATTGAACAGGCCGTTGAATCTGCGGCCGCGATTGTGATGAAATGGAATCCAGATTCTTCGACTTATGCTAAAGTTACTTCCATGTTCTATGAAGATAAAAGAGAAGCCATGCAGTTTATTAAGCGCGTGAATGATCTTCAAAAAGCGATGCATCTTATGGCTTCTGATGATTCCGTTTCCTCTTCCGATCGCCTTGTTTACGCTCAAGGTTTGATGGAAATAGCCATGAAGAGACTTCAGAAGGAGTTCTATCAAATTCTGTCCATGAATCGTGCTCATCTAGATCCAGAATCTGTTTCCACTAGATCCTCTCGGTGCTCCACCAGATCAAGCACTTCTGTTGATTTCGACGAAGAGGGAACCCTAGACGATGAAATCCAAGTCGTAGAAGATTCGATCTCTGAAGTTGAGCAAGTTTCTTTTATGGTTATGGAGGATTTACGAGCCATAGCCGAGTGCATGATCTCCTCTGGCTACGCTAAAGAGTGTGTTAATATGTATAAAGTGATTCGTAAATCGATTATCGATGAAGGTGTGTACCGTCTCGGACTTGAGAAGTTGAGCGCTTCGAGAATCAATAAGATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATTAAACTTGCAATTCGAACGTTGTTCGTTGGTGAAAGAATTCTCTGCGATCACGTCTTTTCCTCATCTGAATCCATTAGAGAATCCTGTTTTGCCGATATATCCAGAGAAGGCGCTTTGCTTCTGTTTGGATTCCCCGAACTTGTTGCAAAGAGTAAAAAATCTCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCGCCGAAAATTGGCCGGACATCGAATCCATTTTCTCATCTGAATCCTCATCTGTAGTTCGATCTCAAGCTCTAACCTCACTCACGAAACTCGGCGAGTTAGTTCGTGCCATTGTTATGGATCTCGAATACTCGATTCAGAAAAATTCATCCAAATCTCCTGTTGCTGGTGGAGGCGTTCATTCCTTAACACTTCTCTCGATGAACTACCTCACTTTCCTCGCTGATTACTGCAACTCTTTGACGGATATTTTCGCCGATTGGAGTCCGCCTGAAAAATCGTCTCTGGAACATATCTTCTTCAGCAGTGCTTCAGAAACCGACGATTCTCAATCGTCTTCTGGAATCTCTTTACGAATGGGATGGCTAATTCTAGTTCTTCTCTGTAAACTCGACAACAAAGCGAAACGCTACAAAGACGTTTCTCTTTCGTATCTCTTCCTTTCTAATAATCTTCAACACGTCGTCTCTAAAGTCCGATCGTCCAATCTTCATTACCTTCTCGGCGACGAGTGGATGGCGAAACAGGAAGTGAAAGTAAGGCAATTCGCAGCTAAGTACGAAGCATTAGCTTGGGGAAGAGTCTTCGATTCCTTGCCGGAGAATCCAACTGAGAAATTCTCACAAGAGGAAGCTAAAGAGATCTTCAGGAACTTCAATATGGCGTTCCAAGAAACTCATCGTAAACAGAAATCCTGCTTCATTCCTGATCCAAAGCTTAGAGACGAAGTTAAATTATCCATCGGAAGAAAGCTTGTTTGGTTCTATGGAGAATTTTACCGTGCCCAAAAAGCTTACGGCGGTGCTAATTATGAAAAACCGTACATCAGATTCTCTCCGGAAGATATCGGTAACTACCTTTCAGATCTCTATTTTGAACCGTCTGATTGGGCAAGTGTTTCCACATCATCCCCGTCCTCCACCTCCTCCTCTCACCGGCGGGAACCCGGACCCCGTTGA 1929 43.96 MPRKGMRSLLFQFSSPSNNSISRYSISSPSRTPALTPRRSFNDVMIEQAVESAAAIVMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLMASDDSVSSSDRLVYAQGLMEIAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDEEGTLDDEIQVVEDSISEVEQVSFMVMEDLRAIAECMISSGYAKECVNMYKVIRKSIIDEGVYRLGLEKLSASRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESIRESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSIAENWPDIESIFSSESSSVVRSQALTSLTKLGELVRAIVMDLEYSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYCNSLTDIFADWSPPEKSSLEHIFFSSASETDDSQSSSGISLRMGWLILVLLCKLDNKAKRYKDVSLSYLFLSNNLQHVVSKVRSSNLHYLLGDEWMAKQEVKVRQFAAKYEALAWGRVFDSLPENPTEKFSQEEAKEIFRNFNMAFQETHRKQKSCFIPDPKLRDEVKLSIGRKLVWFYGEFYRAQKAYGGANYEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRREPGPR* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26479891 26481819 - Chy4G088350.1 Chy04g02117 226016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02117 642 PANTHER EXOCYST COMPLEX PROTEIN EXO70 5 625 IPR004140 GO:0000145|GO:0006887
Chy04g02117 642 Pfam Exo70 exocyst complex subunit 250 612 IPR046364 GO:0000145|GO:0005546|GO:0006887
Chy04g02117 642 Gene3D Exocyst complex component Exo70 57 620 - -
Chy04g02117 642 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 5 625 - -
Chy04g02117 642 SUPERFAMILY Cullin repeat-like 76 614 IPR016159 -
Chy04g02117 642 MobiDBLite consensus disorder prediction 620 642 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02117 Chy-Chr4:26479891 Chy11g01268 Chy-Chr11:18902583 0 dispersed
Chy10g00590 Chy-Chr10:12514619 Chy04g02117 Chy-Chr4:26479891 1.62E-169 wgd
Chy04g02117 Chy-Chr4:26479891 Chy08g00789 Chy-Chr8:15529608 1.58E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02117 K07195 - csv:101208543 1153.27