Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02130 ATGGAGAAGAACAAAGAGGCGGAAACAGAGAGAGAAATAGTGAGAATTCGCCGGCGTAACGGTAGAATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGACGCTGGGGAAAGAGAACGCTTCGAGTACTGAATTGAAGCGAGACCATCAGTGTCTTGATGTAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCTAAGGAAGTGTCGAATGAAGACGTTCGCTCAGAAGTATCGAATCCTGTAGTTTCTCCGAAAGAGAATCATTTCCATGATATTACTAGCCAGGCTGAGGAGGTAGAAAATACTACCCAAGTTGAGCGTGGGGAGCTCACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAATGACATGTCTCAAAACGACGTTGATATGTGTGTTGTCGATGAGGTTTCTCGAGTTGTGATTGAAATCCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGATAACAATGGCGCATCAGTTTCAGCAGACAAAGTCCATTCTTATGGTAACTCTGACAGGGACGGTAAACCAGAACCTTCATTGTTGGATGATGCTTGTACGGAAACGTCTGCACATAGCTGGGAAGGTTTTGCTGAGAGCAGCAGGTATTCTTTAGGCTCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATGTATCTACGACAAGCGAGATTACGCTACAAGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAACATGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTCGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAAAATGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCGTCTGTTAACTTGAATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGACAGTGCAAATATTGTAGTGGAAAATCATGATGTGAAGCTTCCTAAACTGTCACATCCCGTTGAGAGACCAAACCCTAATTTTTCCAATGCAGTCTTGCAACACAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGATTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTAGCATACTTTGTGAAAGGACAGAGAATACTAGGAGGCTTCAAGCAAGGAAATGGTATTCTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCACGATATTGCAATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTAGGTTCCAATTCGAAGGCTATTTCTGGAGGTTCTTTGAGTTTTTCAAAGCCAATTGTTTTTAGGTTGACACGAGTTGTTAAAGCACCAGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTCTGTGATCAATGTGAGAGAGAATTCCATGTAGGTTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTGGCCCTTCAGAATACAGTTTTGAGTGGGGCACAAATCATTCCAGATTCATTATCAGATTTGATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCCAAATCAGGTCGTGATCTAATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCTGCTGGTCTTCTTAGGATCTTTGGTCGCGAAGTTGCTGAACTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTTCTCCCTGCGGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGCGAAGAACAGTTGATTAAGTATATGAGGGAGGTCCAGCTGACTATCTTCAATGGAACATCAATGCTAGAGAAGGTGGTGGAGCAATCTACGTTATAA 2616 42.32 MEKNKEAETEREIVRIRRRNGRIWRNIYWMGEEAAGLAAVTNETLGKENASSTELKRDHQCLDVDTEPESLHNKKQAKEVSNEDVRSEVSNPVVSPKENHFHDITSQAEEVENTTQVERGELTSACSGNSSSEDISSDGVRCQNDMSQNDVDMCVVDEVSRVVIEIPKHASSTGIRKITFKFSKKKDNNGASVSADKVHSYGNSDRDGKPEPSLLDDACTETSAHSWEGFAESSRYSLGSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEITLQGIINGGGYMCGCSTCNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNLNSFEAWKASFHQDSANIVVENHDVKLPKLSHPVERPNPNFSNAVLQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGFKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSNSKAISGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLSGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVEQSTL* 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26555155 26565269 - Chy4G088480.1 Chy04g02130 226029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02130 871 MobiDBLite consensus disorder prediction 186 215 - -
Chy04g02130 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 658 IPR013083 -
Chy04g02130 871 ProSiteProfiles Zinc finger PHD-type profile. 597 658 IPR019787 -
Chy04g02130 871 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 755 843 IPR016181 -
Chy04g02130 871 Pfam PHD-finger 520 562 IPR019787 -
Chy04g02130 871 Gene3D - 702 866 - -
Chy04g02130 871 SUPERFAMILY FYVE/PHD zinc finger 516 563 IPR011011 -
Chy04g02130 871 ProSiteProfiles Zinc finger PHD-type profile. 518 563 IPR019787 -
Chy04g02130 871 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 59 868 - -
Chy04g02130 871 SMART PHD_3 520 561 IPR001965 -
Chy04g02130 871 SMART PHD_3 599 656 IPR001965 -
Chy04g02130 871 MobiDBLite consensus disorder prediction 123 144 - -
Chy04g02130 871 Pfam Tify domain binding domain 454 503 IPR032308 -
Chy04g02130 871 Pfam Tify domain binding domain 287 341 IPR032308 -
Chy04g02130 871 ProSitePatterns Zinc finger PHD-type signature. 521 560 IPR019786 -
Chy04g02130 871 PANTHER AUTOIMMUNE REGULATOR 59 868 - -
Chy04g02130 871 SUPERFAMILY FYVE/PHD zinc finger 598 653 IPR011011 -
Chy04g02130 871 MobiDBLite consensus disorder prediction 65 85 - -
Chy04g02130 871 MobiDBLite consensus disorder prediction 200 214 - -
Chy04g02130 871 ProSitePatterns Zinc finger PHD-type signature. 600 655 IPR019786 -
Chy04g02130 871 MobiDBLite consensus disorder prediction 65 98 - -
Chy04g02130 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 581 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02003 Chy-Chr4:25813002 Chy04g02130 Chy-Chr4:26555155 2.94E-14 dispersed
Chy04g02130 Chy-Chr4:26555155 Chy11g00855 Chy-Chr11:12004308 0 dispersed
Chy09g01455 Chy-Chr9:16046015 Chy04g02130 Chy-Chr4:26555155 1.53E-07 transposed
Chy10g00556 Chy-Chr10:12208002 Chy04g02130 Chy-Chr4:26555155 4.82E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17945 PF16135 TDBD 4.20E-12 No_clan Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02130 - - csv:101207817 1659.43