Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02130 ATGGAGAAGAACAAAGAGGCGGAAACAGAGAGAGAAATAGTGAGAATTCGCCGGCGTAACGGTAGAATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGACGCTGGGGAAAGAGAACGCTTCGAGTACTGAATTGAAGCGAGACCATCAGTGTCTTGATGTAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCTAAGGAAGTGTCGAATGAAGACGTTCGCTCAGAAGTATCGAATCCTGTAGTTTCTCCGAAAGAGAATCATTTCCATGATATTACTAGCCAGGCTGAGGAGGTAGAAAATACTACCCAAGTTGAGCGTGGGGAGCTCACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAGTTCGTTGCCAGAATGACATGTCTCAAAACGACGTTGATATGTGTGTTGTCGATGAGGTTTCTCGAGTTGTGATTGAAATCCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAGTTCAGCAAAAAAAAGGATAACAATGGCGCATCAGTTTCAGCAGACAAAGTCCATTCTTATGGTAACTCTGACAGGGACGGTAAACCAGAACCTTCATTGTTGGATGATGCTTGTACGGAAACGTCTGCACATAGCTGGGAAGGTTTTGCTGAGAGCAGCAGGTATTCTTTAGGCTCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAATATGTATCTACGACAAGCGAGATTACGCTACAAGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAACATGCAATTTTACAGCTATCCTTAGTGCTTATGAGTTCGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAAAATGGAAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTATGGAAGTAGCGGGTTCGTCTGTTAACTTGAATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGGACAGTGCAAATATTGTAGTGGAAAATCATGATGTGAAGCTTCCTAAACTGTCACATCCCGTTGAGAGACCAAACCCTAATTTTTCCAATGCAGTCTTGCAACACAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGATTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCTGAGCTAGCATACTTTGTGAAAGGACAGAGAATACTAGGAGGCTTCAAGCAAGGAAATGGTATTCTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACAAATGGACTTACACTTCACGATATTGCAATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTAGGTTCCAATTCGAAGGCTATTTCTGGAGGTTCTTTGAGTTTTTCAAAGCCAATTGTTTTTAGGTTGACACGAGTTGTTAAAGCACCAGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTCTGTGATCAATGTGAGAGAGAATTCCATGTAGGTTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAACATCCATGTGGCCCTTCAGAATACAGTTTTGAGTGGGGCACAAATCATTCCAGATTCATTATCAGATTTGATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCCAAATCAGGTCGTGATCTAATACCTGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCTGCTGGTCTTCTTAGGATCTTTGGTCGCGAAGTTGCTGAACTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTTCTCCCTGCGGCCGAGGATGCCGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGCGAAGAACAGTTGATTAAGTATATGAGGGAGGTCCAGCTGACTATCTTCAATGGAACATCAATGCTAGAGAAGGTGGTGGAGCAATCTACGTTATAA 2616 42.32 MEKNKEAETEREIVRIRRRNGRIWRNIYWMGEEAAGLAAVTNETLGKENASSTELKRDHQCLDVDTEPESLHNKKQAKEVSNEDVRSEVSNPVVSPKENHFHDITSQAEEVENTTQVERGELTSACSGNSSSEDISSDGVRCQNDMSQNDVDMCVVDEVSRVVIEIPKHASSTGIRKITFKFSKKKDNNGASVSADKVHSYGNSDRDGKPEPSLLDDACTETSAHSWEGFAESSRYSLGSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEITLQGIINGGGYMCGCSTCNFTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIMEVAGSSVNLNSFEAWKASFHQDSANIVVENHDVKLPKLSHPVERPNPNFSNAVLQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGFKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSNSKAISGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLSGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLIKYMREVQLTIFNGTSMLEKVVEQSTL* 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26555155 26565269 - Chy4G088480.1 Chy04g02130 226029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02130 871 MobiDBLite consensus disorder prediction 186 215 - -
Chy04g02130 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 658 IPR013083 -
Chy04g02130 871 ProSiteProfiles Zinc finger PHD-type profile. 597 658 IPR019787 -
Chy04g02130 871 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 755 843 IPR016181 -
Chy04g02130 871 Pfam PHD-finger 520 562 IPR019787 -
Chy04g02130 871 Gene3D - 702 866 - -
Chy04g02130 871 SUPERFAMILY FYVE/PHD zinc finger 516 563 IPR011011 -
Chy04g02130 871 ProSiteProfiles Zinc finger PHD-type profile. 518 563 IPR019787 -
Chy04g02130 871 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 59 868 - -
Chy04g02130 871 SMART PHD_3 520 561 IPR001965 -
Chy04g02130 871 SMART PHD_3 599 656 IPR001965 -
Chy04g02130 871 MobiDBLite consensus disorder prediction 123 144 - -
Chy04g02130 871 Pfam Tify domain binding domain 454 503 IPR032308 -
Chy04g02130 871 Pfam Tify domain binding domain 287 341 IPR032308 -
Chy04g02130 871 ProSitePatterns Zinc finger PHD-type signature. 521 560 IPR019786 -
Chy04g02130 871 PANTHER AUTOIMMUNE REGULATOR 59 868 - -
Chy04g02130 871 SUPERFAMILY FYVE/PHD zinc finger 598 653 IPR011011 -
Chy04g02130 871 MobiDBLite consensus disorder prediction 65 85 - -
Chy04g02130 871 MobiDBLite consensus disorder prediction 200 214 - -
Chy04g02130 871 ProSitePatterns Zinc finger PHD-type signature. 600 655 IPR019786 -
Chy04g02130 871 MobiDBLite consensus disorder prediction 65 98 - -
Chy04g02130 871 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 581 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02130 - - - csv:101207817 1659.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02003 Chy-Chr4:25813002 Chy04g02130 Chy-Chr4:26555155 2.94E-14 dispersed
Chy04g02130 Chy-Chr4:26555155 Chy11g00855 Chy-Chr11:12004308 0 dispersed
Chy09g01455 Chy-Chr9:16046015 Chy04g02130 Chy-Chr4:26555155 1.53E-07 transposed
Chy10g00556 Chy-Chr10:12208002 Chy04g02130 Chy-Chr4:26555155 4.82E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g02130 . 47 866 PHD Transcription Factor Family AT3G53680 53.7 7.4e-252 867.1
Chy10g00556 . 434 563 PHD Transcription Factor Family AT3G53680 54.6 1.1e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17945 PF16135 TDBD 4.20E-12 No_clan Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g02130 Chy_Chr04 FPKM 52.435741 71.051674 43.483055 44.630466 61.391144 66.302353 50.920761 94.18055 95.067436 88.568497