Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02140 ATGAATTTTTCCTCCATTCCTCCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCATCCATCAGGTGGGAACCAGTAGTAGCACTGCAGTTAATTCTCAGCTTCTTCCTCCTCCTCCACCGCCTCCTCCTCCACCTCCTCCTCCTCCGCCTCCCCATGGCGTCTGTGGTGCCGGTTCGATCCGCCCTGGTTCGATGGCCGAACGAGCTCGAATGGCTAATATTCCCATGCCTGAGGCTGCATTGAAATGCCCAAGATGTGAATCGACCAACACTAAGTTTTGTTACTTTAACAATTATAGCCTTACTCAGCCTCGCCACTTTTGCAAGACTTGTAGGAGGTACTGGACCAGGGGCGGGGCCCTACGGAACGTACCGGTCGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGTAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGCCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGTCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTTAGTGACTTTGACATCGGAAGTTACAGCTACGGGGGTGGCCTTTCAGCTCCCACCTCCGCTACCGGTGACCTGAGTTTCCAATTGGGCAACACTAATTTAGGTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCACCAACAATGGAGGCTCCAGCAACAACCTCCTCAATTTCCCTTCTTATCTAGTTTAGACCCTTTCGAAGGCGGTAATGGTGGCGGCGGAGAAGCACCTGGAACCGGGTGGCAAATGAGGCCAAAAGCACCATCAACAAGTTCAAGGAATAATTTAACCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCGGATCAAGTTAATAATAATGTTGGAAGACAATTTATTGGGAATAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTTAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1035 49.66 MNFSSIPPYLDPSNWQQQVIHQVGTSSSTAVNSQLLPPPPPPPPPPPPPPPPHGVCGAGSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSANSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGSYSYGGGLSAPTSATGDLSFQLGNTNLGGGTSIGSLLGFDHQQWRLQQQPPQFPFLSSLDPFEGGNGGGGEAPGTGWQMRPKAPSTSSRNNLTQMGNSVKMEETPDQVNNNVGRQFIGNNEQYWSSGSMAWSDLSGFSSSSSTRNPL* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26625024 26626502 - Chy4G088580.1 Chy04g02140 226039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02140 344 MobiDBLite consensus disorder prediction 23 62 - -
Chy04g02140 344 MobiDBLite consensus disorder prediction 259 290 - -
Chy04g02140 344 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
Chy04g02140 344 MobiDBLite consensus disorder prediction 34 56 - -
Chy04g02140 344 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Chy04g02140 344 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 340 - -
Chy04g02140 344 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Chy04g02140 344 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 48 - -
Chy04g02140 344 MobiDBLite consensus disorder prediction 140 175 - -
Chy04g02140 344 MobiDBLite consensus disorder prediction 123 181 - -
Chy04g02140 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 340 IPR045174 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02140 - - - csv:101207082 554.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02140 Chy-Chr4:26625024 Chy09g00791 Chy-Chr9:10623346 3.23E-51 dispersed
Chy10g00546 Chy-Chr10:12087430 Chy04g02140 Chy-Chr4:26625024 5.51E-53 wgd
Chy11g01243 Chy-Chr11:18548266 Chy04g02140 Chy-Chr4:26625024 9.52E-46 wgd
Chy12g00184 Chy-Chr12:2228183 Chy04g02140 Chy-Chr4:26625024 3.19E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g716 Blo01g01119 . . . Bpe04g01330 Bpe03g01040 . . Cmo06g00304 Cmo14g00147 Cma03g00431 . Car03g00379 . . Cpe10g00881 Cpe08g01160 . . . . . . . Cla04g00818 Cam04g0898 Cec04g0967 Cco04g1020 Clacu04g0873 Cmu04g0866 Cre01g0476 Cone3ag0333 Cone10ag0305 Cone13ag1337 Cone19ag1320 Lsi01g01417 Csa04g01478 . Cme04g02612 Blo07g01180 . . Bda05g00969 . Bpe02g00845 Bma01g01875 . Sed02g0688 Cmo03g00443 . Cma06g00304 Cma14g00157 Car06g00263 Car14g00128 Cpe03g00124 . Bhi11g02243 Tan08g1993 Cmetu08g1957 . . . . Cla10g02000 Cam10g2068 Cec10g2109 Cco10g2091 Clacu10g2073 Cmu10g2821 Cre10g2214 Lsi03g02101 Csa03g03190 Chy04g02140 Cme08g02396
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00228 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 9.3e-40 160.2
Chy09g01317 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.2e-42 168.7
Chy02g00228 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 51.5 1.7e-38 156.0
Chy04g02140 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 68.8 5.4e-41 165.2
Chy10g00546 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 63.1 1.5e-38 157.1
Chy09g00791 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.2 2.1e-37 153.3
Chy09g01317 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.1e-44 174.9
Chy04g02140 . 55 137 C2C2-Dof Transcription Factor Family AT3G55370 80.7 5.3e-37 152.1
Chy02g02411 . 28 336 C2C2-Dof Transcription Factor Family AT5G60850 51.6 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004817 1 1 1 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17946 PF02701 zf-Dof 3.50E-32 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g02140 Chy_Chr04 FPKM 5.265306 5.545856 9.027987 7.134826 9.403963 4.75165 9.547647 4.907254 2.274231 1.788123