Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02140 ATGAATTTTTCCTCCATTCCTCCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCATCCATCAGGTGGGAACCAGTAGTAGCACTGCAGTTAATTCTCAGCTTCTTCCTCCTCCTCCACCGCCTCCTCCTCCACCTCCTCCTCCTCCGCCTCCCCATGGCGTCTGTGGTGCCGGTTCGATCCGCCCTGGTTCGATGGCCGAACGAGCTCGAATGGCTAATATTCCCATGCCTGAGGCTGCATTGAAATGCCCAAGATGTGAATCGACCAACACTAAGTTTTGTTACTTTAACAATTATAGCCTTACTCAGCCTCGCCACTTTTGCAAGACTTGTAGGAGGTACTGGACCAGGGGCGGGGCCCTACGGAACGTACCGGTCGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGTAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGCCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGTCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTTAGTGACTTTGACATCGGAAGTTACAGCTACGGGGGTGGCCTTTCAGCTCCCACCTCCGCTACCGGTGACCTGAGTTTCCAATTGGGCAACACTAATTTAGGTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCACCAACAATGGAGGCTCCAGCAACAACCTCCTCAATTTCCCTTCTTATCTAGTTTAGACCCTTTCGAAGGCGGTAATGGTGGCGGCGGAGAAGCACCTGGAACCGGGTGGCAAATGAGGCCAAAAGCACCATCAACAAGTTCAAGGAATAATTTAACCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCGGATCAAGTTAATAATAATGTTGGAAGACAATTTATTGGGAATAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTTAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1035 49.66 MNFSSIPPYLDPSNWQQQVIHQVGTSSSTAVNSQLLPPPPPPPPPPPPPPPPHGVCGAGSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSANSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGSYSYGGGLSAPTSATGDLSFQLGNTNLGGGTSIGSLLGFDHQQWRLQQQPPQFPFLSSLDPFEGGNGGGGEAPGTGWQMRPKAPSTSSRNNLTQMGNSVKMEETPDQVNNNVGRQFIGNNEQYWSSGSMAWSDLSGFSSSSSTRNPL* 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26625024 26626502 - Chy4G088580.1 Chy04g02140 226039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02140 344 MobiDBLite consensus disorder prediction 23 62 - -
Chy04g02140 344 MobiDBLite consensus disorder prediction 259 290 - -
Chy04g02140 344 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
Chy04g02140 344 MobiDBLite consensus disorder prediction 34 56 - -
Chy04g02140 344 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Chy04g02140 344 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 4 340 - -
Chy04g02140 344 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Chy04g02140 344 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 48 - -
Chy04g02140 344 MobiDBLite consensus disorder prediction 140 175 - -
Chy04g02140 344 MobiDBLite consensus disorder prediction 123 181 - -
Chy04g02140 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 340 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02140 Chy-Chr4:26625024 Chy09g00791 Chy-Chr9:10623346 3.23E-51 dispersed
Chy10g00546 Chy-Chr10:12087430 Chy04g02140 Chy-Chr4:26625024 5.51E-53 wgd
Chy11g01243 Chy-Chr11:18548266 Chy04g02140 Chy-Chr4:26625024 9.52E-46 wgd
Chy12g00184 Chy-Chr12:2228183 Chy04g02140 Chy-Chr4:26625024 3.19E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17946 PF02701 zf-Dof 3.50E-32 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02140 - - csv:101207082 554.288