Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02153 ATGACCCCAGATAGAGAACTTAGAAAGTCGGGTCGGTACATAGATAATCGTCCTTTTGGGATTCAAGCACAAGAGGGCACCCATGGCAGGCCTAGATTTCAGAATACCATTTTTAGTCATAACTTTCAAGAATTTGATTGCCTTCTCCCTAATCCATCACCGAGCAACATAGCCTCAAGTTCCAGCATTAGAACCTCATCTTCTAATGATGCAAGTCATGAGGAAGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGACATTCATAAATCAAATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCTGCTGAGAAATCATTCTATGAGGTCCTCGGAAAAAAGTATCCTCCTTCCCCTGAGGTAAATAGATCTCTGGCCAATCAATACACTGATAGCTTGAACGAAGAACTTTGTGGAGATAGTAGTAATTACCTGAGTAATTACAGTAATACTTCTTATCGTGGCGATGATGATCCTCAAACTCTGAGTGCAGATGTATTTCAAATCAGAAGCGCTTTAGGTGATACCATATCTCCATCATCTAATAGTTCATCGAATAGTGTAATTAGTGGGGGTGATGGGTGGGTGGACTTCTCTAATAATACAATTCAAGTTCCTGAGCCTAATAACAGAAGCCAATCGATTTGGCAGTTTCAAAAAGGATTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAAATTGTGTCTTGATTTTGAGGTAAATGGGTCAGCAACTCAGGGTCCCGATGAGGGTACGAGCCAAATATATTTGAAGGCAGCTAGAAAGGATCAGAGGAATGTTTTCTCACCTGAATCACGTGGTAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCCGTATTTGCAGAGTCGCCTCTGCGATCTGAGATGTTTGATATTGTGTTGCTTTGTAGTGCTGGAGAGGGACATGAACGGTTAGTTTCATTTCGACAGGAATTACATGATGCTAAAATCAAAAGCATGCTGCAGAGTGGGCAGCTAAAAGTGTCTAATGGTGGTAGGGGTCGTCGGAAGAAGCAGAGTGCGAAAAAAGAGGTTGTGGATTTGAGAACCCTTCTAATTAGCTGTGCTCAAGCTGTTGCAGCTGATGACCATAGGAATGCCAGTGAGCTTCTAAAGCAGGTCAGACAACATGCTTCTCCTTTTGGTGATGGAAGTCAGAGGTTAGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGGTTGGCAGGAACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGGACATCTGCTGCTGATGTACTGAAAGCTTACCACTTGTACCTTGCTGCATGCCCATTTAGAAAGATCTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCAGAGAGCGCAACTAGGCTTCATGTCATAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAAAAGGTGGACCTCCGAAGCTTCGAATTACTGGAATAGAATTTCCACAGCCTGGGTTTCGTCCTGCAGAGAGAGTTGAGGAGACAGGTCGTCGTTTGGCGGCTTATGCAGAGAGTTTCAATGTGCCATTTGAGTATAATGCTATAGCCAAAAAATGGGAATCTGTTACTGTTGAAGATCTCAATATTGATGAAGATGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCAAAAAATTTACTTGATGAGAGTGTTTCTACTGAGAGTGCTAGAAATACTGTTCTTAAATTGGTTCACAAAATTAGTCCTAACTTATTCATCAGTGGCATTGTCAATGGGGCATATAATGCTCCTTTCTTTGTTACTCGATTCCGAGAGGCTTTGTTTCACTTTTCTGCTATTTTTGATATGCTTGAAACCGTTGTACCTCGCGAGGATTATGAGAGAATGCTGTTGGAGAGAGAGATTTTTGGCAGGGAAGCTTTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCGGAAACATACAAGCAGTGGCAATTTCGGATCATGAGGGCTGGATTTGTGCAACTGCCTTTTGCTCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTACAATCAAGTTACCACAGAGATTTTCTGATTGATGAAGATAGCAGATGGTTACTTCAGGGTTGGAAAGGTCGAATTATATATGCCATCTCTACATGGAAACCTTCTGTCGAGTAA 2265 41.5 MTPDRELRKSGRYIDNRPFGIQAQEGTHGRPRFQNTIFSHNFQEFDCLLPNPSPSNIASSSSIRTSSSNDASHEEDYLEDCDFSDAVLTFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEVNRSLANQYTDSLNEELCGDSSNYLSNYSNTSYRGDDDPQTLSADVFQIRSALGDTISPSSNSSSNSVISGGDGWVDFSNNTIQVPEPNNRSQSIWQFQKGFEEASKFLPGGNKLCLDFEVNGSATQGPDEGTSQIYLKAARKDQRNVFSPESRGRKNPHDENGDLEEERSSKQAAVFAESPLRSEMFDIVLLCSAGEGHERLVSFRQELHDAKIKSMLQSGQLKVSNGGRGRRKKQSAKKEVVDLRTLLISCAQAVAADDHRNASELLKQVRQHASPFGDGSQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAESATRLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWESVTVEDLNIDEDEFLVVNCLYRAKNLLDESVSTESARNTVLKLVHKISPNLFISGIVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDYERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFAPEIFERAVEKVQSSYHRDFLIDEDSRWLLQGWKGRIIYAISTWKPSVE* 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26695033 26697297 + Chy4G088710.1 Chy04g02153 226052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02153 754 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 37 751 IPR005202 -
Chy04g02153 754 ProSiteProfiles GRAS family profile. 370 750 IPR005202 -
Chy04g02153 754 MobiDBLite consensus disorder prediction 274 307 - -
Chy04g02153 754 Pfam GRAS domain family 379 750 IPR005202 -
Chy04g02153 754 MobiDBLite consensus disorder prediction 278 307 - -
Chy04g02153 754 PANTHER SCARECROW-LIKE PROTEIN 9 37 751 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02153 - - - csv:101205887 1461.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02153 Chy-Chr4:26695033 Chy03g00094 Chy-Chr3:912130 3.01E-67 dispersed
Chy01g01757 Chy-Chr1:23270371 Chy04g02153 Chy-Chr4:26695033 2.72E-33 transposed
Chy02g00456 Chy-Chr2:2851400 Chy04g02153 Chy-Chr4:26695033 2.71E-61 transposed
Chy02g02635 Chy-Chr2:29429831 Chy04g02153 Chy-Chr4:26695033 9.95E-57 transposed
Chy06g01877 Chy-Chr6:22636667 Chy04g02153 Chy-Chr4:26695033 1.54E-67 transposed
Chy11g00700 Chy-Chr11:8882365 Chy04g02153 Chy-Chr4:26695033 1.46E-72 transposed
Chy11g01219 Chy-Chr11:18370398 Chy04g02153 Chy-Chr4:26695033 0 wgd
Chy12g00215 Chy-Chr12:2538666 Chy04g02153 Chy-Chr4:26695033 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g744 . . . . Bpe04g01322 . Bma04g01386 . Cmo06g00292 Cmo14g00135 . . . . . . Cpe08g01167 . . . . . . . . . . . . . . . Cone10ag0315 . Cone19ag1332 . . . Cme04g02627 . Blo09g00319 Bda03g01464 . . . . . Sed04g1261 . . Cma06g00294 Cma14g00142 Car06g00255 Car14g00115 Cpe03g00113 . Bhi11g02267 Tan08g2009 Cmetu08g0553 Lac10g3111 . . . Cla10g02012 Cam10g2080 Cec10g2124 Cco10g2105 Clacu10g2088 Cmu10g2833 Cre10g2227 Lsi03g02114 Csa03g03178 Chy04g02153 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g02153 . 74 752 GRAS Transcription Factor Family AT2G37650 54.0 7.9e-199 690.6
Chy12g00215 . 316 698 GRAS Transcription Factor Family AT3G46600 56.1 9.1e-126 447.6
Chy02g00853 . 21 441 GRAS Transcription Factor Family AT3G49950 60.4 6.5e-137 484.2
Chy07g01075 . 39 438 GRAS Transcription Factor Family AT5G41920 67.5 1.3e-148 523.1
Chy08g00536 . 462 838 GRAS Transcription Factor Family AT5G41920 56.6 3.1e-115 412.1
Chy02g00656 CCT 1 610 GRAS Transcription Factor Family AT5G66770 58.8 3.5e-184 641.7
Chy07g01294 CCT 8 538 GRAS Transcription Factor Family AT5G66770 58.5 4.9e-162 568.2
Chy11g00700 . 57 546 GRAS Transcription Factor Family AT1G50600 59.6 8.9e-163 570.5
Chy06g01877 . 46 544 GRAS Transcription Factor Family AT1G50600 57.1 3.9e-158 555.1
Chy02g00456 . 103 542 GRAS Transcription Factor Family AT1G50600 55.6 6.2e-140 494.6
Chy04g01026 . 203 594 GRAS Transcription Factor Family AT1G50600 57.7 5.6e-133 471.5
Chy09g00844 . 44 581 GRAS Transcription Factor Family AT1G14920 68.4 1.4e-208 722.6
Chy09g00488 . 53 600 GRAS Transcription Factor Family AT1G14920 61.1 5.1e-182 634.4
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT1G14920 55.1 4.5e-154 541.6
Chy06g01964 . 2 259 GRAS Transcription Factor Family AT1G55580 55.8 1.4e-79 293.9
Chy09g00488 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 1.9e-181 632.5
Chy09g00844 . 1 579 GRAS Transcription Factor Family AT1G66350 56.8 4.1e-173 604.7
Chy06g01359 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 2.7e-156 548.9
Chy11g00700 . 19 546 GRAS Transcription Factor Family AT5G48150 65.7 3.1e-194 674.9
Chy06g01877 . 19 544 GRAS Transcription Factor Family AT5G48150 57.4 2.5e-167 585.5
Chy02g00456 . 15 542 GRAS Transcription Factor Family AT5G48150 51.7 2.0e-148 522.7
Chy04g01026 . 103 594 GRAS Transcription Factor Family AT5G48150 51.0 3.5e-137 485.3
Chy09g00844 . 46 578 GRAS Transcription Factor Family AT2G01570 69.3 3.0e-212 734.9
Chy09g00488 . 55 598 GRAS Transcription Factor Family AT2G01570 62.6 1.4e-188 656.4
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT2G01570 55.8 5.6e-158 554.7
Chy09g00488 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 1.9e-181 632.5
Chy09g00844 . 1 579 GRAS Transcription Factor Family AT1G66350 56.8 4.1e-173 604.7
Chy06g01359 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 2.7e-156 548.9
Chy09g00488 . 55 598 GRAS Transcription Factor Family AT3G03450 62.0 1.9e-179 625.9
Chy09g00844 . 46 578 GRAS Transcription Factor Family AT3G03450 60.0 7.8e-170 594.0
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT3G03450 56.7 2.3e-153 539.3
Chy09g00488 . 48 600 GRAS Transcription Factor Family AT5G17490 56.6 4.1e-160 561.6
Chy09g00844 . 42 578 GRAS Transcription Factor Family AT5G17490 56.8 1.8e-155 546.2
Chy06g01359 . 26 554 GRAS Transcription Factor Family AT5G17490 51.7 1.7e-134 476.5
Chy01g01269 . 1 571 GRAS Transcription Factor Family AT1G21450 57.5 1.6e-173 606.3
Chy06g01877 . 168 544 GRAS Transcription Factor Family AT1G21450 51.1 6.8e-111 398.3
Chy04g01026 . 226 594 GRAS Transcription Factor Family AT1G21450 50.3 4.6e-107 385.6
Chy12g00215 . 324 698 GRAS Transcription Factor Family AT5G59450 56.5 7.0e-127 451.4
Chy02g00456 . 1 541 GRAS Transcription Factor Family AT4G17230 58.3 8.6e-174 607.1
Chy06g01877 . 49 544 GRAS Transcription Factor Family AT4G17230 52.1 5.1e-134 474.9
Chy04g01026 . 221 594 GRAS Transcription Factor Family AT4G17230 52.1 1.4e-110 397.1
Chy11g00700 . 134 546 GRAS Transcription Factor Family AT2G04890 66.0 7.2e-160 560.5
Chy06g01877 . 148 544 GRAS Transcription Factor Family AT2G04890 58.7 4.9e-140 494.6
Chy04g01026 . 207 594 GRAS Transcription Factor Family AT2G04890 55.7 4.7e-127 451.4
Chy02g00456 . 161 542 GRAS Transcription Factor Family AT2G04890 58.1 4.4e-125 444.9
Chy02g01488 . 1 472 GRAS Transcription Factor Family AT1G50420 66.2 9.3e-175 610.1
Chy10g01343 . 639 1078 GRAS Transcription Factor Family AT1G50420 59.8 4.2e-143 505.0
Chy06g02042 . 343 706 GRAS Transcription Factor Family AT4G00150 55.7 9.0e-105 377.9
Chy02g00656 CCT 1 610 GRAS Transcription Factor Family AT3G50650 51.1 3.6e-151 531.9
Chy07g01294 CCT 9 538 GRAS Transcription Factor Family AT3G50650 53.4 1.0e-145 513.8
Chy08g00536 . 184 836 GRAS Transcription Factor Family AT3G54220 60.1 1.5e-204 709.5
Chy07g01075 . 71 439 GRAS Transcription Factor Family AT3G54220 64.5 1.8e-136 483.4
Chy02g00841 . 90 490 GRAS Transcription Factor Family AT4G37650 67.3 6.0e-159 557.8
Chy11g00187 . 104 496 GRAS Transcription Factor Family AT4G37650 56.3 2.0e-125 446.4
Chy11g01923 . 31 422 GRAS Transcription Factor Family AT4G37650 50.1 1.0e-110 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003169 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 2 1 1 1 1 1 4 1 4 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17948 PF03514 GRAS 3.60E-117 CL0063 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy04g02153 Chy_Chr04 FPKM 3.506063 3.495713 0.321207 0.309337 1.041064 0.8859 0.953106 0.02063 0.0 0.018858