Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy04g02186 ATGGCTGAGGGTATTGAATCCTACGACCATGTCCCTCAACAGAGCCGCCGTGACAAGCTCCGTGAACATCCCGACCACCACCACCGTTCTAATTTCATACCTTTTTACGACCCTTCTTCTTCTGACTCTTCCAATCGCTTCCAATTTCACCACCATCCTTTTTTCGACCCCCAAATTCAATCCCCTATTTTTCCTGAAATCCACTCCTTCCCCACCGAACCTCTTTCCCTTTCCCTCTCCTCTCACCCTAATTTTCTTGCTTCTCCTATTACGGCTCCTCCTCTTCCTCTTGGCCCTTTCACCGGCTACGCTTCCATTTTAAAAGGCTCCAGGTTCCTCAAGCCTGCTCATCACTTGCTTCAAGACCTCTGTGATTCTGTTCATTATTCCTCCTCTTCTTCTTCTTTCATCCATGATCCTTCCACTGATTCCTTCCCCCATTCCCCAATTCTTGACCATCACTACCCTCTTCCTTCTTCTTCCGATTCTTCTACTCCTCCTCATAAATCAACGCTTCTCTCAATGCTTGATGAGGTTTACAGAAAATATAAGCAGTACTATCAACAAATCCAAGAAGTAATGACATCATTCGAGTACATCTCGGGGCTTGGGAATGCAGCACCATATGCCAACCAGGCTATAAAAGCCATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTAGACCAACTTCAATTCAATAAAAAAACTCATGGTGACTACAATCAAAGATCCGTTCAGAACCCTGGATTTCTCGACCATCAGCCTGTTTGGCGACCACAACGAGGGCTGCCTGAACGAGCAGTAACTGTTCTTCGTGCTTGGTTGTTCGAACATTTCTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTAGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTAGAAACCAAGCAGCAACAAACACAGAAGAATTTACATAAAGAAGATCGAACCACCACCAGAGTAAACGATCATCATCCATCGAACTCGCTCACGATGGAAAACCCTTCTACATCCACTCAACAAATTCAAGACACTCCTCCCAAACGCACTCGAAATGAACCTCCTGACATGCCAATGGGAAACCATGACGAGCCCTTGAATGTATCCTATAACTTATCTAGCCATCCCCACGTTGGAGCGAACGTAAACATGGCAGGTAACAACGGTGGAGTTTCCTTGACTCTTGGTCTTCACCAGAATAACGGTATAGGTGGCTTTTCTGAACCCTTCCCTGTAGGGTTCCCTGTTGCAGCCACTCGACGTTTTGGCCTAGGAATACAAGGCAACAACGATGGGTATGTGATGGGTGGACATTTCAGTCGAGATGTTCTTGGAGGGCAGCTGTTACATGACTTTGTGGGCTGA 1446 45.44 MAEGIESYDHVPQQSRRDKLREHPDHHHRSNFIPFYDPSSSDSSNRFQFHHHPFFDPQIQSPIFPEIHSFPTEPLSLSLSSHPNFLASPITAPPLPLGPFTGYASILKGSRFLKPAHHLLQDLCDSVHYSSSSSSFIHDPSTDSFPHSPILDHHYPLPSSSDSSTPPHKSTLLSMLDEVYRKYKQYYQQIQEVMTSFEYISGLGNAAPYANQAIKAMYKHFKCLKNAILDQLQFNKKTHGDYNQRSVQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQQQTQKNLHKEDRTTTRVNDHHPSNSLTMENPSTSTQQIQDTPPKRTRNEPPDMPMGNHDEPLNVSYNLSSHPHVGANVNMAGNNGGVSLTLGLHQNNGIGGFSEPFPVGFPVAATRRFGLGIQGNNDGYVMGGHFSRDVLGGQLLHDFVG* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26875456 26878768 - Chy4G089040.1 Chy04g02186 226085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy04g02186 481 SMART HOX_1 259 323 IPR001356 GO:0003677
Chy04g02186 481 MobiDBLite consensus disorder prediction 330 391 - -
Chy04g02186 481 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677|GO:0006355
Chy04g02186 481 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 54 442 - -
Chy04g02186 481 MobiDBLite consensus disorder prediction 10 32 - -
Chy04g02186 481 SUPERFAMILY Homeodomain-like 261 326 IPR009057 -
Chy04g02186 481 Pfam Associated with HOX 106 228 IPR006563 -
Chy04g02186 481 MobiDBLite consensus disorder prediction 350 375 - -
Chy04g02186 481 CDD homeodomain 259 320 IPR001356 GO:0003677
Chy04g02186 481 Gene3D - 262 324 - -
Chy04g02186 481 SMART prehox3 101 230 IPR006563 -
Chy04g02186 481 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677
Chy04g02186 481 MobiDBLite consensus disorder prediction 1 39 - -
Chy04g02186 481 MobiDBLite consensus disorder prediction 334 349 - -
Chy04g02186 481 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 54 442 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy04g02186 Chy08g00703 CCT
Chy04g02186 Chy08g00703 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01857 Chy-Chr4:24758171 Chy04g02186 Chy-Chr4:26875456 1.81E-61 dispersed
Chy04g02186 Chy-Chr4:26875456 Chy12g00801 Chy-Chr12:12810356 8.69E-77 dispersed
Chy04g02186 Chy-Chr4:26875456 Chy08g00703 Chy-Chr8:14879184 1.05E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17952 PF07526 POX 1.40E-29 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy04g02186 - - csv:101221128 938.332