Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy04g02201 | ATGGGGCCTCAGGAAGTTTCCCAGTCCGACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTCAGCGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGACGAGGGTTCGTGTTATTCTCAGTTTTTTTCGACCAACGGTGGTTCTTACGATGAGTATAGGTTTGCTTTCGTTTCTCAGCCGGAGGTTGGAGTTGTTTCGGATTCTCGGCGAGTTTCGTCGGTTTCGGATCGTTCTGTGGAGGTTGAAAATGAAAATGGGATCACTGAAATTAAGGTGCATTCAGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAATCTGGAATCCCAATCGAATTGGGTTGTTCGTGCAAAGATGATTTAGCCGCTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAATAAGACATGTGAGATTTGTCATTCCATTGCTCGAAATATTCTCGGACCAAATGAGGTTGAGCTAACAGATCAGTCTAATGAATCCAACAACGCCTCCTCGACAACTACAGTTGCTGCATCAATTCCCTCATCAGATAGCCAAAGTTTCTGGCGTGGGCACAGGTTTCTGAATTTTCTGCTCGCTTGTATGGTATTTGCTTTTGTTATATCTTGGCTGTTTCACTTCAATGTGCCCTCGTAA | 696 | 44.83 | MGPQEVSQSDIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCYSQFFSTNGGSYDEYRFAFVSQPEVGVVSDSRRVSSVSDRSVEVENENGITEIKVHSAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNILGPNEVELTDQSNESNNASSTTTVAASIPSSDSQSFWRGHRFLNFLLACMVFAFVISWLFHFNVPS* | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 26953978 | 26956136 | - | Chy4G089190.1 | Chy04g02201 | 226100 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy04g02201 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 166 | IPR013083 | - | |
| Chy04g02201 | 231 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Chy04g02201 | 231 | PANTHER | OS01G0850200 PROTEIN | 8 | 231 | - | - | |
| Chy04g02201 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
| Chy04g02201 | 231 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
| Chy04g02201 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
| Chy04g02201 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 | |
| Chy04g02201 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 | |
| Chy04g02201 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 8 | 231 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g00221 | Chy-Chr2:1474453 | Chy04g02201 | Chy-Chr4:26953978 | 1.42E-23 | dispersed | |
| Chy04g02201 | Chy-Chr4:26953978 | Chy12g00838 | Chy-Chr12:13657421 | 1.73E-28 | dispersed | |
| Chy08g00384 | Chy-Chr8:9038388 | Chy04g02201 | Chy-Chr4:26953978 | 2.18E-08 | dispersed | |
| Chy12g00249 | Chy-Chr12:2769552 | Chy04g02201 | Chy-Chr4:26953978 | 1.83E-49 | wgd | |
| Chy03g00162 | Chy-Chr3:1464650 | Chy04g02201 | Chy-Chr4:26953978 | 2.77E-71 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy04g02201 | - | - | csv:101218915 | 430.254 |